Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35657 * 116.99873 * 2 1 4 4 N 1.31749 * 119.58518 * 5.35752 * 3 2 1 5 5 C 1.33731 * 121.46452 * 179.97438 * 4 3 2 6 6 C 1.41210 * 119.76392 * 180.02562 * 5 4 3 7 7 H 1.08008 * 120.00167 * 171.30633 * 6 5 4 8 8 C 1.40006 * 120.00107 * 351.30513 * 6 5 4 9 9 N 1.30768 * 120.00099 * 187.22716 * 8 6 5 10 10 Si 1.86800 * 120.00000 * 7.22169 * 8 6 5 11 11 H 1.48504 * 109.47242 * 182.11660 * 10 8 6 12 12 H 1.48500 * 109.47217 * 302.11769 * 10 8 6 13 13 H 1.48503 * 109.47085 * 62.11685 * 10 8 6 14 14 C 1.40650 * 120.47285 * 0.27227 * 5 4 3 15 15 C 1.38193 * 119.14423 * 359.43625 * 14 5 4 16 16 C 1.38976 * 118.63361 * 0.55272 * 15 14 5 17 17 F 1.35106 * 120.27127 * 179.70988 * 16 15 14 18 18 H 1.09004 * 109.47187 * 185.69704 * 1 2 3 19 19 H 1.09003 * 109.47316 * 305.69519 * 1 2 3 20 20 H 1.08999 * 109.47460 * 65.69380 * 1 2 3 21 21 H 0.97004 * 120.00227 * 354.87968 * 9 8 6 22 22 H 1.07998 * 120.42919 * 179.70096 * 14 5 4 23 23 H 1.08002 * 120.68199 * 180.28136 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 7 1.3237 2.3062 0.1070 5 6 1.8916 3.5169 0.1116 6 6 1.0842 4.6694 0.2286 7 1 1.5418 5.6369 0.3740 8 6 -0.3096 4.5581 0.1563 9 7 -1.0506 5.6350 0.1224 10 14 -1.1106 2.8713 0.1079 11 1 -2.5821 3.0255 -0.0192 12 1 -0.5904 2.1094 -1.0558 13 1 -0.7960 2.1379 1.3603 14 6 3.2869 3.6507 -0.0045 15 6 4.0654 2.5139 -0.1117 16 6 3.4373 1.2742 -0.1126 17 9 4.1659 0.1417 -0.2216 18 1 -0.3634 -1.0226 0.1020 19 1 -0.3634 0.5996 0.8346 20 1 -0.3634 0.4230 -0.9365 21 1 -0.6413 6.5088 0.2221 22 1 3.7443 4.6290 -0.0056 23 1 5.1395 2.5877 -0.1976 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213883059.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -79.409929 kcal Electronic energy + Delta-G solvation = -12388.494720 eV Core-core repulsion = 9922.575357 eV Total energy + Delta-G solvation = -2465.919363 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.36341 -41.12461 -38.81787 -35.75395 -32.96769 -31.81835 -28.86063 -26.86817 -24.05270 -23.17378 -20.64878 -19.33640 -18.32230 -17.71148 -17.29920 -15.97099 -15.88823 -15.79039 -15.52357 -14.78748 -14.21702 -14.10547 -13.72822 -13.41209 -13.30568 -12.65590 -11.83380 -11.81266 -11.64117 -11.21200 -10.49134 -9.88056 -9.44357 -9.33450 -6.92642 0.39119 0.56314 1.48320 1.57160 1.95110 2.15742 2.34067 2.47285 3.31513 3.66103 3.75306 4.16649 4.35809 4.39794 4.42025 4.66182 4.77273 5.12312 5.27847 5.36890 5.58178 5.74633 6.00733 6.31606 6.56226 7.20260 7.84262 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.040472 B = 0.017704 C = 0.012412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.675014 B = 1581.153253 C = 2255.264882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.319 6.319 3 C 0.329 3.671 4 N -0.618 5.618 5 C 0.253 3.747 6 C -0.483 4.483 7 H 0.083 0.917 8 C 0.013 3.987 9 N -0.814 5.814 10 Si 1.175 2.825 11 H -0.326 1.326 12 H -0.275 1.275 13 H -0.283 1.283 14 C -0.267 4.267 15 C -0.032 4.032 16 C -0.131 4.131 17 F -0.153 7.153 18 H 0.135 0.865 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.287 0.713 22 H 0.139 0.861 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -5.794 -0.280 6.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.227 6.227 3 C 0.146 3.854 4 N -0.353 5.353 5 C 0.130 3.870 6 C -0.515 4.515 7 H 0.101 0.899 8 C -0.206 4.206 9 N -0.436 5.436 10 Si 1.009 2.991 11 H -0.259 1.259 12 H -0.203 1.203 13 H -0.212 1.212 14 C -0.288 4.288 15 C -0.056 4.056 16 C -0.154 4.154 17 F -0.132 7.132 18 H 0.153 0.847 19 H 0.077 0.923 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.157 0.843 23 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.740 -6.721 -0.361 6.772 hybrid contribution 2.225 1.292 0.157 2.578 sum 2.966 -5.429 -0.204 6.190 Atomic orbital electron populations 1.23963 0.77007 1.05597 1.02712 1.86168 1.23655 1.24619 1.88217 1.20044 0.88641 0.85072 0.91627 1.66234 1.37691 0.98875 1.32546 1.18535 0.91957 0.88736 0.87751 1.20859 0.93797 0.94167 1.42652 0.89861 1.28589 0.95340 1.08269 0.88393 1.70680 1.41063 1.00720 1.31096 0.82119 0.69606 0.67964 0.79385 1.25944 1.20344 1.21235 1.21673 0.92972 0.98911 1.15240 1.21240 1.01137 0.89048 0.94162 1.17250 0.86104 0.83688 1.28397 1.91322 1.76776 1.49336 1.95786 0.84698 0.92299 0.91966 0.90207 0.84333 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.16 113.37 1.04 1.08 14 2 O -0.32 -13.58 10.34 -89.72 -0.93 -14.50 14 3 C 0.33 15.32 7.50 85.10 0.64 15.95 14 4 N -0.62 -30.42 3.99 -302.22 -1.20 -31.63 14 5 C 0.25 12.50 6.42 40.17 0.26 12.76 14 6 C -0.48 -24.99 9.55 23.43 0.22 -24.77 14 7 H 0.08 4.26 8.06 -2.91 -0.02 4.24 14 8 C 0.01 0.67 5.52 85.28 0.47 1.14 14 9 N -0.81 -42.63 13.65 21.83 0.30 -42.34 14 10 Si 1.18 53.98 22.31 68.60 1.53 55.51 14 11 H -0.33 -14.65 7.11 99.48 0.71 -13.95 14 12 H -0.28 -12.36 4.81 99.48 0.48 -11.88 14 13 H -0.28 -12.75 5.74 99.48 0.57 -12.18 14 14 C -0.27 -11.35 9.83 22.85 0.22 -11.12 14 15 C -0.03 -1.26 10.13 22.44 0.23 -1.04 14 16 C -0.13 -5.69 7.38 22.84 0.17 -5.52 14 17 F -0.15 -6.41 17.13 44.97 0.77 -5.64 14 18 H 0.14 3.39 8.14 -2.39 -0.02 3.37 14 19 H 0.06 2.22 4.60 -2.39 -0.01 2.21 14 20 H 0.06 2.22 5.90 -2.39 -0.01 2.21 14 21 H 0.29 14.36 8.73 -92.71 -0.81 13.55 14 22 H 0.14 5.24 8.06 -2.91 -0.02 5.22 14 23 H 0.17 4.98 8.06 -2.91 -0.02 4.96 14 Total: -1.00 -56.91 202.11 4.55 -52.36 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: 0.83 Total: -2.26 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 3.25 Total: -11.51 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -0.91 Total: -73.96 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.93 Total: -14.50 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.77 Total: -5.64 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.53 Total: 55.51 kcal Total: -56.91 4.55 -52.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213883059.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.046 kcal (2) G-P(sol) polarization free energy of solvation -56.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds