Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47179 * 2 1 4 4 C 1.35240 * 116.99646 * 180.02562 * 3 2 1 5 5 O 1.34726 * 126.49932 * 359.97232 * 4 3 2 6 6 C 1.35074 * 107.66390 * 180.02562 * 5 4 3 7 7 C 1.39501 * 125.59073 * 179.73766 * 6 5 4 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 6 5 9 9 C 1.40220 * 120.00166 * 0.02562 * 7 6 5 10 10 N 1.30723 * 120.00225 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99687 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46881 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46636 * 119.99840 * 11 9 7 14 14 H 1.48500 * 109.46764 * 239.99872 * 11 9 7 15 15 N 1.32884 * 108.80912 * 359.97438 * 6 5 4 16 16 C 1.32878 * 108.83506 * 0.02562 * 15 6 5 17 17 C 1.50704 * 126.15677 * 180.02562 * 16 15 6 18 18 H 1.09004 * 109.46958 * 299.99819 * 1 2 3 19 19 H 1.08997 * 109.47571 * 59.99375 * 1 2 3 20 20 H 1.08995 * 109.47476 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46958 * 240.00181 * 2 1 3 22 22 H 1.08999 * 109.47268 * 119.99916 * 2 1 3 23 23 H 0.97002 * 120.00307 * 180.02562 * 10 9 7 24 24 H 1.09000 * 109.46865 * 269.96929 * 17 16 15 25 25 H 1.08993 * 109.47644 * 29.97408 * 17 16 15 26 26 H 1.09002 * 109.46893 * 149.97487 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3471 1.5244 -0.0005 5 8 4.2834 0.5557 -0.0006 6 6 5.4937 1.1554 -0.0006 7 6 6.7248 0.4995 0.0046 8 1 7.6412 1.0711 0.0044 9 6 6.7726 -0.9019 0.0099 10 7 5.6635 -1.5938 0.0095 11 14 8.4213 -1.7802 0.0161 12 1 9.5164 -0.7772 0.0136 13 1 8.5269 -2.6261 1.2320 14 1 8.5311 -2.6353 -1.1931 15 7 5.3191 2.4728 -0.0012 16 6 4.0160 2.7328 -0.0009 17 6 3.3821 4.1000 -0.0020 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 5.6965 -2.5632 0.0136 24 1 3.2292 4.4303 1.0255 25 1 4.0366 4.8036 -0.5162 26 1 2.4219 4.0549 -0.5158 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213884296.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -43.714560 kcal Electronic energy + Delta-G solvation = -12438.903534 eV Core-core repulsion = 10097.992344 eV Total energy + Delta-G solvation = -2340.911190 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02099 -37.47465 -33.77795 -33.25223 -31.26227 -29.59590 -27.27824 -24.41510 -22.58399 -20.52378 -19.72055 -17.30765 -17.14817 -15.77806 -15.20774 -14.28293 -13.99387 -13.92630 -12.91028 -12.43661 -12.28429 -12.13799 -12.00845 -11.35880 -11.29787 -11.20910 -10.88079 -10.73322 -10.34079 -10.20688 -9.56823 -9.19168 -8.67620 -6.94045 -6.93106 -4.53732 2.85154 3.02340 3.09994 3.32672 3.81082 3.85167 4.09665 4.81436 5.24250 5.37111 5.45179 5.72651 5.91494 6.01863 6.14748 6.18678 6.31895 6.44870 6.56694 6.96331 7.00714 7.42944 7.74379 8.14200 8.32182 8.57312 8.69693 9.81623 10.10153 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.011783 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.226815 B = 2375.820937 C = 3069.295959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.276 6.276 4 C 0.000 4.000 5 O -0.201 6.201 6 C 0.347 3.653 7 C -0.427 4.427 8 H 0.113 0.887 9 C 0.069 3.931 10 N -0.784 5.784 11 Si 0.932 3.068 12 H -0.256 1.256 13 H -0.271 1.271 14 H -0.271 1.271 15 N -0.592 5.592 16 C -0.007 4.007 17 C -0.048 4.048 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.284 0.716 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 -0.949 -0.017 4.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.192 6.192 4 C -0.098 4.098 5 O -0.096 6.096 6 C 0.161 3.839 7 C -0.463 4.463 8 H 0.131 0.869 9 C -0.153 4.153 10 N -0.412 5.412 11 Si 0.756 3.244 12 H -0.179 1.179 13 H -0.197 1.197 14 H -0.197 1.197 15 N -0.327 5.327 16 C -0.131 4.131 17 C -0.106 4.106 18 H 0.080 0.920 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.501 -0.579 -0.019 4.538 hybrid contribution -0.045 -1.414 0.013 1.415 sum -4.546 -1.993 -0.006 4.963 Atomic orbital electron populations 1.21746 0.93729 1.02144 1.02785 1.22451 0.94380 0.82929 1.01860 1.86052 1.13917 1.27360 1.91855 1.21373 0.80600 0.88257 1.19523 1.84779 1.15978 1.34546 1.74309 1.21615 0.83497 0.84994 0.93750 1.18350 0.89739 0.90712 1.47525 0.86881 1.26096 0.99310 0.97748 0.92099 1.69743 1.28772 1.08608 1.34126 0.85855 0.80701 0.79286 0.78592 1.17949 1.19650 1.19655 1.70810 1.14572 1.13418 1.33938 1.20835 0.89454 0.92383 1.10390 1.19771 0.98554 0.91444 1.00790 0.91985 0.91984 0.90974 0.92549 0.92537 0.90508 0.92726 0.92128 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 37.16 0.38 -1.67 15 2 C 0.06 1.15 6.43 37.16 0.24 1.39 15 3 O -0.28 -6.37 10.17 -40.49 -0.41 -6.78 15 4 C 0.00 0.00 7.96 30.69 0.24 0.25 15 5 O -0.20 -5.87 8.57 -20.70 -0.18 -6.05 15 6 C 0.35 10.27 7.63 -16.63 -0.13 10.14 15 7 C -0.43 -11.84 9.43 -38.37 -0.36 -12.20 15 8 H 0.11 2.97 7.85 -52.48 -0.41 2.56 15 9 C 0.07 1.75 5.50 -17.28 -0.10 1.65 15 10 N -0.78 -20.71 11.96 55.56 0.66 -20.05 15 11 Si 0.93 18.51 29.56 -169.99 -5.03 13.48 15 12 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 13 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 14 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 15 N -0.59 -17.07 11.33 -9.21 -0.10 -17.18 15 16 C -0.01 -0.18 7.18 -82.18 -0.59 -0.77 15 17 C -0.05 -0.98 10.43 36.01 0.38 -0.60 15 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.28 6.68 8.29 -40.82 -0.34 6.34 15 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 239.04 15.07 3.60 3.60 Total: -1.00 -31.25 239.04 -4.31 -35.57 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.93 Total: -0.78 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 0.07 Total: -1.82 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.56 Total: -37.23 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.59 Total: -12.83 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.25 -4.31 -35.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213884296.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.149 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds