Wall clock time and date at job start Mon Mar 30 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42907 * 109.47179 * 2 1 4 4 C 1.35240 * 116.99646 * 180.02562 * 3 2 1 5 5 O 1.34726 * 126.49932 * 359.97232 * 4 3 2 6 6 C 1.35074 * 107.66390 * 180.02562 * 5 4 3 7 7 C 1.39501 * 125.59073 * 179.73766 * 6 5 4 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 6 5 9 9 C 1.40220 * 120.00166 * 0.02562 * 7 6 5 10 10 N 1.30723 * 120.00225 * 0.02562 * 9 7 6 11 11 Si 1.86809 * 119.99687 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46881 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46636 * 119.99840 * 11 9 7 14 14 H 1.48500 * 109.46764 * 239.99872 * 11 9 7 15 15 N 1.32884 * 108.80912 * 359.97438 * 6 5 4 16 16 C 1.32878 * 108.83506 * 0.02562 * 15 6 5 17 17 C 1.50704 * 126.15677 * 180.02562 * 16 15 6 18 18 H 1.09004 * 109.46958 * 299.99819 * 1 2 3 19 19 H 1.08997 * 109.47571 * 59.99375 * 1 2 3 20 20 H 1.08995 * 109.47476 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46958 * 240.00181 * 2 1 3 22 22 H 1.08999 * 109.47268 * 119.99916 * 2 1 3 23 23 H 0.97002 * 120.00307 * 180.02562 * 10 9 7 24 24 H 1.09000 * 109.46865 * 269.96929 * 17 16 15 25 25 H 1.08993 * 109.47644 * 29.97408 * 17 16 15 26 26 H 1.09002 * 109.46893 * 149.97487 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3471 1.5244 -0.0005 5 8 4.2834 0.5557 -0.0006 6 6 5.4937 1.1554 -0.0006 7 6 6.7248 0.4995 0.0046 8 1 7.6412 1.0711 0.0044 9 6 6.7726 -0.9019 0.0099 10 7 5.6635 -1.5938 0.0095 11 14 8.4213 -1.7802 0.0161 12 1 9.5164 -0.7772 0.0136 13 1 8.5269 -2.6261 1.2320 14 1 8.5311 -2.6353 -1.1931 15 7 5.3191 2.4728 -0.0012 16 6 4.0160 2.7328 -0.0009 17 6 3.3821 4.1000 -0.0020 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 5.6965 -2.5632 0.0136 24 1 3.2292 4.4303 1.0255 25 1 4.0366 4.8036 -0.5162 26 1 2.4219 4.0549 -0.5158 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213884296.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:34 Heat of formation + Delta-G solvation = -66.408728 kcal Electronic energy + Delta-G solvation = -12439.887627 eV Core-core repulsion = 10097.992344 eV Total energy + Delta-G solvation = -2341.895283 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.10064 -39.26026 -35.76606 -35.31149 -32.78473 -31.42961 -29.21466 -26.29020 -24.19050 -22.48836 -21.74098 -19.32843 -19.05899 -17.65281 -17.08276 -16.08500 -15.89153 -15.66584 -14.63102 -13.94559 -13.87207 -13.58820 -13.52867 -13.11775 -13.05796 -12.97184 -12.61012 -12.45968 -11.93740 -11.82414 -11.50991 -11.15924 -10.82266 -8.98786 -8.86728 -6.62504 1.03842 1.39607 1.51242 1.59932 1.97885 2.12766 2.17459 2.92784 3.15634 3.96695 4.07259 4.10908 4.33940 4.36554 4.75979 4.86794 4.89238 4.94878 5.02707 5.12037 5.13211 5.51960 5.72344 6.06074 6.34936 6.54761 6.63808 7.71087 8.18706 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.038921 B = 0.011783 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.226815 B = 2375.820937 C = 3069.295959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 O -0.274 6.274 4 C -0.021 4.021 5 O -0.221 6.221 6 C 0.312 3.688 7 C -0.456 4.456 8 H 0.118 0.882 9 C 0.026 3.974 10 N -0.816 5.816 11 Si 1.018 2.982 12 H -0.249 1.249 13 H -0.259 1.259 14 H -0.259 1.259 15 N -0.618 5.618 16 C -0.022 4.022 17 C -0.042 4.042 18 H 0.072 0.928 19 H 0.072 0.928 20 H 0.101 0.899 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.297 0.703 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 -1.570 0.003 5.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 O -0.190 6.190 4 C -0.118 4.118 5 O -0.118 6.118 6 C 0.127 3.873 7 C -0.491 4.491 8 H 0.135 0.865 9 C -0.192 4.192 10 N -0.444 5.444 11 Si 0.836 3.164 12 H -0.172 1.172 13 H -0.183 1.183 14 H -0.183 1.183 15 N -0.355 5.355 16 C -0.145 4.145 17 C -0.100 4.100 18 H 0.091 0.909 19 H 0.091 0.909 20 H 0.120 0.880 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.592 -1.185 0.001 4.742 hybrid contribution -0.105 -1.251 0.008 1.255 sum -4.697 -2.436 0.009 5.291 Atomic orbital electron populations 1.21750 0.89024 1.04446 1.03811 1.22764 0.97933 0.81112 1.00453 1.86055 1.11820 1.29479 1.91641 1.21809 0.81710 0.88288 1.20023 1.84724 1.16420 1.35693 1.74935 1.22231 0.84335 0.85752 0.94946 1.18806 0.89421 0.92360 1.48526 0.86451 1.27249 1.03989 0.97527 0.90467 1.69799 1.31514 1.09766 1.33303 0.84620 0.74657 0.77827 0.79321 1.17239 1.18336 1.18345 1.70793 1.16237 1.13301 1.35120 1.21727 0.88902 0.94681 1.09217 1.19898 0.99178 0.88442 1.02436 0.90941 0.90924 0.88003 0.93998 0.94001 0.89189 0.90872 0.90985 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 10.28 71.98 0.74 -2.70 15 2 C 0.05 2.04 6.43 71.98 0.46 2.50 15 3 O -0.27 -12.68 10.17 -63.16 -0.64 -13.32 15 4 C -0.02 -1.17 7.96 67.79 0.54 -0.63 15 5 O -0.22 -13.40 8.57 7.64 0.07 -13.34 15 6 C 0.31 19.06 7.63 84.84 0.65 19.71 15 7 C -0.46 -25.78 9.43 23.06 0.22 -25.57 15 8 H 0.12 6.29 7.85 -2.91 -0.02 6.27 15 9 C 0.03 1.32 5.50 85.34 0.47 1.79 15 10 N -0.82 -43.45 11.96 21.88 0.26 -43.18 15 11 Si 1.02 37.06 29.56 68.60 2.03 39.08 15 12 H -0.25 -8.73 7.11 99.48 0.71 -8.02 15 13 H -0.26 -8.88 7.11 99.48 0.71 -8.18 15 14 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 15 N -0.62 -36.53 11.33 -295.93 -3.35 -39.88 15 16 C -0.02 -1.16 7.18 42.37 0.30 -0.85 15 17 C -0.04 -1.67 10.43 71.24 0.74 -0.93 15 18 H 0.07 1.74 8.14 -2.38 -0.02 1.72 15 19 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.04 1.71 8.14 -2.38 -0.02 1.69 15 22 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.30 13.89 8.29 -92.71 -0.77 13.12 15 24 H 0.07 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -69.21 239.04 3.66 -65.55 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.17 Total: 11.77 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.12 Total: -6.69 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.09 Total: -83.06 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.58 Total: -26.66 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Total: -69.21 3.66 -65.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213884296.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.859 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds