Wall clock time and date at job start Mon Mar 30 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37695 * 120.56237 * 2 1 4 4 N 1.32038 * 121.05151 * 180.28479 * 3 2 1 5 5 C 1.31991 * 122.34565 * 359.71626 * 4 3 2 6 6 C 1.37898 * 120.98254 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 120.59281 * 180.02562 * 6 5 4 8 8 C 1.41051 * 120.55874 * 179.72030 * 2 1 3 9 9 C 1.41430 * 121.04075 * 359.97438 * 8 2 1 10 10 H 1.07999 * 120.00037 * 316.08666 * 9 8 2 11 11 C 1.40052 * 119.99866 * 135.81328 * 9 8 2 12 12 N 1.30742 * 120.00048 * 339.35662 * 11 9 8 13 13 Si 1.86803 * 120.00152 * 159.35761 * 11 9 8 14 14 H 1.48504 * 109.46971 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47199 * 120.00046 * 13 11 9 16 16 H 1.48500 * 109.47005 * 240.00159 * 13 11 9 17 17 H 1.09004 * 109.47016 * 270.27782 * 1 2 3 18 18 H 1.08995 * 109.47070 * 30.27778 * 1 2 3 19 19 H 1.08996 * 109.47072 * 150.27999 * 1 2 3 20 20 H 1.07998 * 119.47145 * 359.97438 * 3 2 1 21 21 H 1.07994 * 119.51273 * 179.97438 * 5 4 3 22 22 H 0.96997 * 120.00078 * 185.63925 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.1857 0.0000 4 7 3.5275 1.1969 -0.0056 5 6 4.2431 0.0879 -0.0060 6 6 3.6347 -1.1496 0.0001 7 17 4.5859 -2.6018 0.0003 8 6 2.2241 -1.2146 0.0059 9 6 1.5514 -2.4587 0.0125 10 1 0.7022 -2.6099 0.6623 11 6 1.9831 -3.4926 -0.8277 12 7 2.7102 -3.2197 -1.8795 13 14 1.5200 -5.2616 -0.4458 14 1 0.6991 -5.3023 0.7910 15 1 0.7399 -5.8243 -1.5771 16 1 2.7535 -6.0643 -0.2473 17 1 -0.3633 0.0050 1.0277 18 1 -0.3633 0.8874 -0.5181 19 1 -0.3633 -0.8925 -0.5095 20 1 1.6677 2.1213 -0.0004 21 1 5.3213 0.1505 -0.0111 22 1 2.9405 -3.9237 -2.5058 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213894032.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:58 Heat of formation + Delta-G solvation = -9.503748 kcal Electronic energy + Delta-G solvation = -10347.466060 eV Core-core repulsion = 8312.914431 eV Total energy + Delta-G solvation = -2034.551628 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.34528 -36.87447 -35.82018 -33.76706 -31.86262 -28.44342 -27.13061 -23.54184 -22.27352 -19.44566 -17.49894 -16.74877 -16.30852 -15.99733 -14.90067 -14.41836 -13.99471 -13.51454 -13.32612 -13.23805 -13.03592 -12.54848 -12.33540 -12.19861 -11.95944 -11.47519 -10.78562 -9.97085 -9.52479 -9.22013 -8.66127 -6.52380 0.63999 0.88957 1.39763 1.46366 1.51880 1.92938 2.21369 2.78370 3.45210 3.92689 4.38927 4.63255 4.64986 4.85244 5.03373 5.08968 5.22753 5.37454 5.54340 5.84609 6.07482 6.37665 6.69847 6.86425 7.50439 8.34149 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.038949 B = 0.017994 C = 0.013246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.721517 B = 1555.671293 C = 2113.298074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.227 4.227 3 C 0.086 3.914 4 N -0.564 5.564 5 C 0.093 3.907 6 C -0.148 4.148 7 Cl -0.086 7.086 8 C 0.112 3.888 9 C -0.489 4.489 10 H 0.088 0.912 11 C 0.061 3.939 12 N -0.799 5.799 13 Si 0.958 3.042 14 H -0.255 1.255 15 H -0.264 1.264 16 H -0.272 1.272 17 H 0.062 0.938 18 H 0.070 0.930 19 H 0.054 0.946 20 H 0.161 0.839 21 H 0.146 0.854 22 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -0.547 1.814 2.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.231 4.231 3 C -0.066 4.066 4 N -0.278 5.278 5 C -0.062 4.062 6 C -0.179 4.179 7 Cl -0.058 7.058 8 C 0.104 3.896 9 C -0.519 4.519 10 H 0.106 0.894 11 C -0.158 4.158 12 N -0.424 5.424 13 Si 0.779 3.221 14 H -0.178 1.178 15 H -0.189 1.189 16 H -0.197 1.197 17 H 0.081 0.919 18 H 0.089 0.911 19 H 0.073 0.927 20 H 0.178 0.822 21 H 0.163 0.837 22 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.301 0.059 1.638 2.093 hybrid contribution -0.210 -1.749 -0.115 1.765 sum -1.511 -1.689 1.524 2.731 Atomic orbital electron populations 1.20322 0.89636 1.01940 1.01286 1.21340 0.98181 0.92756 1.10864 1.22489 0.89892 0.97564 0.96658 1.67576 1.08676 1.29614 1.21925 1.22271 0.99582 0.86746 0.97580 1.22348 0.93012 0.86904 1.15674 1.98189 1.71300 1.39346 1.96951 1.17943 0.89969 0.94257 0.87459 1.19479 1.14541 0.95576 1.22325 0.89426 1.26323 0.92211 1.03858 0.93418 1.69791 1.27199 1.37047 1.08360 0.85492 0.79000 0.77652 0.79924 1.17798 1.18907 1.19741 0.91926 0.91091 0.92736 0.82162 0.83654 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.75 9.62 71.24 0.68 -2.07 14 2 C -0.23 -10.33 5.96 -19.30 -0.11 -10.44 14 3 C 0.09 3.73 10.84 84.53 0.92 4.65 14 4 N -0.56 -26.13 10.33 -196.29 -2.03 -28.16 14 5 C 0.09 4.37 10.97 84.59 0.93 5.30 14 6 C -0.15 -7.43 5.98 22.92 0.14 -7.29 14 7 Cl -0.09 -4.06 25.12 -2.72 -0.07 -4.13 14 8 C 0.11 5.73 5.29 -21.07 -0.11 5.62 14 9 C -0.49 -24.56 7.44 23.50 0.17 -24.39 14 10 H 0.09 4.25 7.82 -2.91 -0.02 4.23 14 11 C 0.06 2.95 3.86 85.30 0.33 3.28 14 12 N -0.80 -40.36 11.14 21.84 0.24 -40.11 14 13 Si 0.96 37.43 29.61 68.60 2.03 39.47 14 14 H -0.25 -9.67 7.11 99.48 0.71 -8.96 14 15 H -0.26 -9.81 7.11 99.48 0.71 -9.11 14 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 14 17 H 0.06 2.09 8.14 -2.39 -0.02 2.07 14 18 H 0.07 2.20 8.10 -2.39 -0.02 2.18 14 19 H 0.05 2.14 7.20 -2.39 -0.02 2.13 14 20 H 0.16 5.65 8.06 -2.91 -0.02 5.63 14 21 H 0.15 6.11 8.06 -2.91 -0.02 6.09 14 22 H 0.29 13.40 8.30 -92.71 -0.77 12.63 14 Total: -1.00 -55.68 213.15 4.35 -51.34 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.23 Total: 6.94 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 2.94 Total: -25.34 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -1.78 Total: -68.27 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 17 Polarization: -4.06 SS G_CDS: -0.07 Total: -4.13 kcal Total: -55.68 4.35 -51.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213894032.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.832 kcal (2) G-P(sol) polarization free energy of solvation -55.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds