Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47026 * 300.00262 * 3 2 1 6 6 H 1.48491 * 109.47132 * 59.99995 * 3 2 1 7 7 C 1.37883 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99934 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.57793 * 302.70843 * 9 7 2 11 11 C 1.54096 * 110.52010 * 180.02562 * 9 7 2 12 12 N 1.47086 * 103.77739 * 241.37180 * 11 9 7 13 13 C 1.46499 * 125.56392 * 180.02562 * 12 11 9 14 14 C 1.53000 * 117.50453 * 188.61879 * 13 12 11 15 15 C 1.52994 * 117.50243 * 119.99283 * 13 12 11 16 16 C 1.34007 * 108.88399 * 359.97438 * 12 11 9 17 17 O 1.21501 * 123.07931 * 179.97438 * 16 12 11 18 18 O 1.33779 * 113.85444 * 0.02562 * 16 12 11 19 19 H 0.96992 * 120.00747 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.56412 * 359.94305 * 11 9 7 21 21 H 1.09000 * 110.56496 * 122.64828 * 11 9 7 22 22 H 1.09005 * 115.54590 * 334.33134 * 13 12 11 23 23 H 1.08998 * 117.49251 * 359.97438 * 14 13 12 24 24 H 1.08997 * 117.49632 * 145.01476 * 14 13 12 25 25 H 1.08998 * 117.50433 * 214.98065 * 15 13 12 26 26 H 1.09009 * 117.49831 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5823 -2.5554 0.8583 11 6 2.2308 -3.6885 -0.0005 12 7 1.9253 -4.3941 -1.2544 13 6 2.5887 -5.6100 -1.7314 14 6 2.2694 -6.0780 -3.1527 15 6 1.7191 -6.8494 -1.9515 16 6 0.9401 -3.7439 -1.8890 17 8 0.4854 -4.1070 -2.9556 18 8 0.5038 -2.6578 -1.2412 19 1 -0.4851 0.8399 -0.0004 20 1 3.2620 -3.3352 -0.0015 21 1 2.0493 -4.3341 0.8588 22 1 3.6038 -5.7659 -1.3660 23 1 1.5654 -5.4814 -3.7326 24 1 3.0746 -6.5416 -3.7226 25 1 2.1621 -7.8207 -1.7313 26 1 0.6533 -6.7603 -1.7409 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218714655.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -41.643524 kcal Electronic energy + Delta-G solvation = -12636.294919 eV Core-core repulsion = 10295.473536 eV Total energy + Delta-G solvation = -2340.821383 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.38763 -37.02946 -35.84358 -32.86259 -32.80208 -28.86767 -24.96768 -23.09160 -22.17302 -21.65633 -19.46500 -17.16616 -16.64557 -15.59843 -15.25562 -14.85267 -14.57570 -13.58041 -13.17954 -12.94334 -12.48995 -12.36623 -11.70840 -11.25930 -11.06733 -10.88069 -10.61341 -10.48421 -10.24840 -9.86313 -9.28182 -8.96911 -8.78660 -7.97763 -6.32046 -4.51577 3.16340 3.25161 3.28528 3.32792 3.65718 4.18449 4.25368 4.71012 5.03698 5.12556 5.26655 5.34303 5.55062 5.79259 5.87713 5.91470 6.12612 6.24306 6.57822 6.78274 7.03491 7.28648 7.58016 7.77186 8.48131 8.73602 9.04991 9.24772 10.74694 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.067948 B = 0.009954 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.979189 B = 2812.319476 C = 2923.820045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.195 3.805 10 H 0.077 0.923 11 C 0.078 3.922 12 N -0.614 5.614 13 C 0.105 3.895 14 C -0.192 4.192 15 C -0.197 4.197 16 C 0.636 3.364 17 O -0.562 6.562 18 O -0.312 6.312 19 H 0.269 0.731 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -7.967 0.924 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.128 4.128 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.587 4.587 8 H 0.092 0.908 9 C 0.143 3.857 10 H 0.095 0.905 11 C -0.045 4.045 12 N -0.361 5.361 13 C 0.002 3.998 14 C -0.229 4.229 15 C -0.235 4.235 16 C 0.394 3.606 17 O -0.453 6.453 18 O -0.220 6.220 19 H 0.079 0.921 20 H 0.099 0.901 21 H 0.086 0.914 22 H 0.144 0.856 23 H 0.151 0.849 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.131 -7.830 0.371 9.369 hybrid contribution 0.549 0.788 0.146 0.972 sum 5.680 -7.042 0.517 9.062 Atomic orbital electron populations 1.70008 1.06324 1.27750 1.44748 1.25166 0.94910 1.00087 0.92673 0.86342 0.80103 0.82467 0.77991 1.19300 1.20480 1.20461 1.21236 0.93144 0.89327 1.54998 0.90841 1.21564 0.88691 0.92868 0.82577 0.90539 1.23013 1.02034 0.94079 0.85334 1.47473 1.38356 1.26923 1.23316 1.21141 0.95529 0.83625 0.99555 1.23734 1.04411 1.03245 0.91503 1.23356 1.00647 0.95684 1.03862 1.19043 0.78387 0.79500 0.83720 1.90736 1.63601 1.69940 1.20986 1.87692 1.58017 1.39098 1.37240 0.92095 0.90125 0.91429 0.85619 0.84913 0.88938 0.88665 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.29 13.11 55.43 0.73 -23.57 15 2 C 0.08 2.16 5.44 -17.82 -0.10 2.06 15 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 15 7 C -0.55 -14.38 8.82 -34.44 -0.30 -14.69 15 8 H 0.07 1.83 7.38 -52.49 -0.39 1.44 15 9 C 0.20 4.78 3.62 -27.31 -0.10 4.68 15 10 H 0.08 1.89 8.14 -51.93 -0.42 1.47 15 11 C 0.08 1.51 7.33 -3.15 -0.02 1.49 15 12 N -0.61 -12.47 3.30 -171.23 -0.56 -13.03 15 13 C 0.11 1.70 6.95 -67.93 -0.47 1.22 15 14 C -0.19 -3.03 9.78 -26.73 -0.26 -3.29 15 15 C -0.20 -2.86 10.36 -26.74 -0.28 -3.14 15 16 C 0.64 15.84 8.74 53.71 0.47 16.31 15 17 O -0.56 -14.75 14.65 -19.11 -0.28 -15.03 15 18 O -0.31 -8.59 10.56 -37.85 -0.40 -8.99 15 19 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 20 H 0.08 1.47 7.45 -51.93 -0.39 1.08 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 22 H 0.13 1.62 8.14 -51.93 -0.42 1.19 15 23 H 0.13 2.60 5.34 -51.93 -0.28 2.32 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.09 1.55 8.14 -51.92 -0.42 1.12 15 LS Contribution 230.84 15.07 3.48 3.48 Total: -1.00 -30.93 230.84 -5.85 -36.77 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.72 Total: 0.46 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.06 Total: 4.64 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.16 Total: -36.60 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.68 Total: -24.02 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.93 -5.85 -36.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218714655.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.870 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds