Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47091 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47026 * 300.00262 * 3 2 1 6 6 H 1.48491 * 109.47132 * 59.99995 * 3 2 1 7 7 C 1.37883 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99470 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99934 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.57793 * 302.70843 * 9 7 2 11 11 C 1.54096 * 110.52010 * 180.02562 * 9 7 2 12 12 N 1.47086 * 103.77739 * 241.37180 * 11 9 7 13 13 C 1.46499 * 125.56392 * 180.02562 * 12 11 9 14 14 C 1.53000 * 117.50453 * 188.61879 * 13 12 11 15 15 C 1.52994 * 117.50243 * 119.99283 * 13 12 11 16 16 C 1.34007 * 108.88399 * 359.97438 * 12 11 9 17 17 O 1.21501 * 123.07931 * 179.97438 * 16 12 11 18 18 O 1.33779 * 113.85444 * 0.02562 * 16 12 11 19 19 H 0.96992 * 120.00747 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.56412 * 359.94305 * 11 9 7 21 21 H 1.09000 * 110.56496 * 122.64828 * 11 9 7 22 22 H 1.09005 * 115.54590 * 334.33134 * 13 12 11 23 23 H 1.08998 * 117.49251 * 359.97438 * 14 13 12 24 24 H 1.08997 * 117.49632 * 145.01476 * 14 13 12 25 25 H 1.08998 * 117.50433 * 214.98065 * 15 13 12 26 26 H 1.09009 * 117.49831 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5823 -2.5554 0.8583 11 6 2.2308 -3.6885 -0.0005 12 7 1.9253 -4.3941 -1.2544 13 6 2.5887 -5.6100 -1.7314 14 6 2.2694 -6.0780 -3.1527 15 6 1.7191 -6.8494 -1.9515 16 6 0.9401 -3.7439 -1.8890 17 8 0.4854 -4.1070 -2.9556 18 8 0.5038 -2.6578 -1.2412 19 1 -0.4851 0.8399 -0.0004 20 1 3.2620 -3.3352 -0.0015 21 1 2.0493 -4.3341 0.8588 22 1 3.6038 -5.7659 -1.3660 23 1 1.5654 -5.4814 -3.7326 24 1 3.0746 -6.5416 -3.7226 25 1 2.1621 -7.8207 -1.7313 26 1 0.6533 -6.7603 -1.7409 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218714655.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -62.614717 kcal Electronic energy + Delta-G solvation = -12637.204299 eV Core-core repulsion = 10295.473536 eV Total energy + Delta-G solvation = -2341.730763 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.18148 -38.62411 -37.59589 -34.87788 -34.44101 -30.73175 -26.82270 -24.61891 -23.69945 -23.15553 -21.15936 -19.07037 -18.24117 -17.42647 -17.04342 -16.54894 -16.28094 -15.08605 -14.89865 -14.76897 -14.16480 -13.90982 -13.53215 -12.86061 -12.78929 -12.50415 -12.31684 -11.99606 -11.76999 -11.35425 -11.10290 -10.91276 -10.78313 -9.51110 -8.33236 -6.59521 1.40516 1.43143 1.55857 1.76093 1.83463 2.33593 2.80122 2.94781 3.36545 3.72606 3.85263 3.99496 4.10477 4.39636 4.53853 4.62063 4.79892 4.98883 5.13640 5.25170 5.36409 5.56139 5.75459 5.81859 6.52003 6.84687 7.18559 7.24117 8.74852 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.067948 B = 0.009954 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.979189 B = 2812.319476 C = 2923.820045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.563 4.563 8 H 0.086 0.914 9 C 0.181 3.819 10 H 0.061 0.939 11 C 0.091 3.909 12 N -0.604 5.604 13 C 0.088 3.912 14 C -0.200 4.200 15 C -0.179 4.179 16 C 0.623 3.377 17 O -0.590 6.590 18 O -0.353 6.353 19 H 0.270 0.730 20 H 0.100 0.900 21 H 0.105 0.895 22 H 0.172 0.828 23 H 0.089 0.911 24 H 0.129 0.871 25 H 0.139 0.861 26 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -9.072 1.599 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.177 1.177 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.599 4.599 8 H 0.104 0.896 9 C 0.128 3.872 10 H 0.079 0.921 11 C -0.031 4.031 12 N -0.349 5.349 13 C -0.013 4.013 14 C -0.238 4.238 15 C -0.217 4.217 16 C 0.379 3.621 17 O -0.482 6.482 18 O -0.263 6.263 19 H 0.079 0.921 20 H 0.119 0.881 21 H 0.123 0.877 22 H 0.189 0.811 23 H 0.108 0.892 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.694 -8.971 1.068 11.867 hybrid contribution -0.263 1.057 -0.084 1.092 sum 7.432 -7.914 0.985 10.901 Atomic orbital electron populations 1.70143 1.08175 1.28609 1.46650 1.26131 0.95637 1.04023 0.92238 0.85270 0.79403 0.77818 0.77747 1.17651 1.21290 1.19491 1.21696 0.93911 0.90226 1.54059 0.89585 1.21678 0.89381 0.94896 0.81214 0.92130 1.22998 1.01357 0.92669 0.86087 1.47604 1.36846 1.27587 1.22903 1.21827 0.97417 0.82248 0.99852 1.23679 1.04906 1.03546 0.91624 1.23400 0.99184 0.96957 1.02178 1.19284 0.79536 0.79504 0.83751 1.90724 1.64832 1.70529 1.22145 1.87613 1.59443 1.40767 1.38459 0.92142 0.88147 0.87715 0.81137 0.89246 0.85255 0.84292 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.55 13.11 21.45 0.28 -52.27 15 2 C 0.02 1.29 5.44 84.66 0.46 1.75 15 3 Si 0.97 41.50 29.54 68.60 2.03 43.53 15 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.56 -29.19 8.82 25.60 0.23 -28.97 15 8 H 0.09 4.13 7.38 -2.91 -0.02 4.10 15 9 C 0.18 8.86 3.62 30.22 0.11 8.97 15 10 H 0.06 3.08 8.14 -2.39 -0.02 3.06 15 11 C 0.09 3.30 7.33 86.64 0.64 3.93 15 12 N -0.60 -23.48 3.30 -927.36 -3.06 -26.54 15 13 C 0.09 2.53 6.95 44.99 0.31 2.85 15 14 C -0.20 -5.88 9.78 30.59 0.30 -5.59 15 15 C -0.18 -4.66 10.36 30.59 0.32 -4.34 15 16 C 0.62 31.46 8.74 129.91 1.13 32.60 15 17 O -0.59 -31.97 14.65 19.68 0.29 -31.68 15 18 O -0.35 -20.03 10.56 -47.39 -0.50 -20.53 15 19 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 20 H 0.10 3.28 7.45 -2.39 -0.02 3.26 15 21 H 0.10 3.05 8.14 -2.39 -0.02 3.03 15 22 H 0.17 3.40 8.14 -2.38 -0.02 3.38 15 23 H 0.09 3.52 5.34 -2.39 -0.01 3.51 15 24 H 0.13 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.14 2.43 8.14 -2.39 -0.02 2.41 15 26 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 Total: -1.00 -69.72 230.84 3.71 -66.01 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.18 Total: 10.28 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 3.49 Total: 11.20 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.78 Total: -78.81 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.21 Total: -52.21 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -69.72 3.71 -66.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218714655.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.394 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds