Wall clock time and date at job start Mon Mar 30 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00319 * 2 1 4 4 H 1.48498 * 109.47068 * 270.00212 * 3 2 1 5 5 H 1.48501 * 109.46896 * 29.99925 * 3 2 1 6 6 H 1.48498 * 109.47225 * 149.99899 * 3 2 1 7 7 C 1.37882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99856 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.34516 * 125.78774 * 89.99807 * 10 9 7 12 12 C 1.41376 * 106.84089 * 179.97438 * 11 10 9 13 13 C 1.34515 * 106.84242 * 0.02562 * 12 11 10 14 14 N 1.48037 * 125.79546 * 179.73453 * 13 12 11 15 15 O 1.21805 * 119.99395 * 0.02562 * 14 13 12 16 16 O 1.21797 * 120.00424 * 179.97438 * 14 13 12 17 17 O 1.34298 * 125.79155 * 269.97029 * 10 9 7 18 18 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.47565 * 59.99899 * 9 7 2 20 20 H 1.09004 * 109.47295 * 299.99889 * 9 7 2 21 21 H 1.08003 * 126.58045 * 0.02562 * 11 10 9 22 22 H 1.07995 * 126.58185 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.2763 -3.3565 -1.0913 12 6 4.7224 -4.6171 -0.6324 13 6 4.7052 -4.5709 0.7118 14 7 5.0894 -5.6741 1.6211 15 8 5.4619 -6.7393 1.1626 16 8 5.0339 -5.5164 2.8276 17 8 4.2756 -3.3556 1.0892 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6809 0.8905 20 1 3.8752 -0.6797 -0.8895 21 1 4.1680 -3.0477 -2.1206 22 1 5.0198 -5.4562 -1.2437 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220159176.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:17 Heat of formation + Delta-G solvation = 12.764437 kcal Electronic energy + Delta-G solvation = -11809.814214 eV Core-core repulsion = 9335.519042 eV Total energy + Delta-G solvation = -2474.295172 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.95269 -41.65594 -36.49618 -33.93583 -33.14499 -31.62311 -28.90096 -25.55825 -22.86649 -21.97143 -20.57444 -19.34656 -18.48925 -17.76019 -17.18830 -15.72598 -15.50867 -14.29059 -13.69504 -13.23592 -12.99021 -12.49623 -12.06954 -11.56957 -11.22052 -11.09949 -11.06576 -10.79468 -10.36925 -10.17780 -9.79228 -8.89223 -8.57663 -6.37220 -4.43216 0.15380 0.89561 1.90666 2.53738 3.08169 3.16681 3.17951 3.31263 4.13573 4.69777 4.86757 4.96662 5.24896 5.68244 5.82050 6.14493 6.32307 6.44671 6.50259 6.99643 7.19136 7.81735 8.09527 8.62050 9.16676 10.74594 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.067031 B = 0.008261 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.618820 B = 3388.666165 C = 3458.380983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.046 3.954 10 C 0.145 3.855 11 C -0.247 4.247 12 C -0.065 4.065 13 C -0.029 4.029 14 N 0.078 4.922 15 O -0.154 6.154 16 O -0.152 6.152 17 O -0.150 6.150 18 H 0.271 0.729 19 H 0.050 0.950 20 H 0.064 0.936 21 H 0.171 0.829 22 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -4.129 -2.385 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.097 0.903 9 C 0.009 3.991 10 C 0.090 3.910 11 C -0.266 4.266 12 C -0.087 4.087 13 C -0.162 4.162 14 N 0.594 4.406 15 O -0.364 6.364 16 O -0.369 6.369 17 O -0.045 6.045 18 H 0.081 0.919 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.189 0.811 22 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.679 -3.441 -2.504 9.666 hybrid contribution 0.333 0.474 0.141 0.596 sum 9.011 -2.967 -2.363 9.777 Atomic orbital electron populations 1.69859 1.06284 1.27698 1.48222 1.24909 0.94853 0.99082 0.93684 0.86804 0.80459 0.83339 0.79020 1.19611 1.20560 1.18714 1.20688 0.86731 0.95561 1.54434 0.90309 1.18815 0.98363 0.81851 1.00028 1.24040 0.89810 0.95356 0.81757 1.21731 1.10803 0.92831 1.01264 1.21732 0.96503 0.99864 0.90613 1.22005 1.20279 0.85775 0.88145 1.42128 0.98041 0.99796 1.00653 1.94552 1.49821 1.10972 1.81086 1.94595 1.57718 1.88168 0.96370 1.84014 1.64815 1.19269 1.36430 0.91917 0.93229 0.91866 0.81104 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.43 0.77 -24.56 14 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 14 3 Si 0.88 19.21 27.47 -169.99 -4.67 14.55 14 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 14 6 H -0.26 -5.43 6.54 56.52 0.37 -5.06 14 7 C -0.54 -14.01 9.65 -34.44 -0.33 -14.34 14 8 H 0.08 2.29 7.98 -52.48 -0.42 1.87 14 9 C 0.05 0.98 4.58 -29.03 -0.13 0.85 14 10 C 0.14 2.81 6.51 -35.62 -0.23 2.58 14 11 C -0.25 -4.01 10.81 -39.70 -0.43 -4.44 14 12 C -0.07 -1.00 10.57 -39.71 -0.42 -1.42 14 13 C -0.03 -0.54 8.24 -10.94 -0.09 -0.63 14 14 N 0.08 1.43 4.46 32.63 0.15 1.57 14 15 O -0.15 -2.63 19.01 -29.46 -0.56 -3.19 14 16 O -0.15 -2.93 19.26 -32.37 -0.62 -3.55 14 17 O -0.15 -3.06 10.65 0.97 0.01 -3.05 14 18 H 0.27 7.19 8.31 -40.82 -0.34 6.85 14 19 H 0.05 1.04 7.20 -51.93 -0.37 0.67 14 20 H 0.06 1.20 7.57 -51.93 -0.39 0.81 14 21 H 0.17 2.31 8.06 -52.48 -0.42 1.88 14 22 H 0.17 2.00 8.06 -52.49 -0.42 1.57 14 LS Contribution 218.54 15.07 3.29 3.29 Total: -1.00 -28.29 218.54 -4.56 -32.85 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -1.20 Total: -2.52 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.73 Total: -15.39 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.92 Total: -22.99 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -1.17 Total: -9.79 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.55 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -28.29 -4.56 -32.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220159176.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.617 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds