Wall clock time and date at job start Mon Mar 30 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00319 * 2 1 4 4 H 1.48498 * 109.47068 * 270.00212 * 3 2 1 5 5 H 1.48501 * 109.46896 * 29.99925 * 3 2 1 6 6 H 1.48498 * 109.47225 * 149.99899 * 3 2 1 7 7 C 1.37882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99856 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.50707 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.34516 * 125.78774 * 89.99807 * 10 9 7 12 12 C 1.41376 * 106.84089 * 179.97438 * 11 10 9 13 13 C 1.34515 * 106.84242 * 0.02562 * 12 11 10 14 14 N 1.48037 * 125.79546 * 179.73453 * 13 12 11 15 15 O 1.21805 * 119.99395 * 0.02562 * 14 13 12 16 16 O 1.21797 * 120.00424 * 179.97438 * 14 13 12 17 17 O 1.34298 * 125.79155 * 269.97029 * 10 9 7 18 18 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.47565 * 59.99899 * 9 7 2 20 20 H 1.09004 * 109.47295 * 299.99889 * 9 7 2 21 21 H 1.08003 * 126.58045 * 0.02562 * 11 10 9 22 22 H 1.07995 * 126.58185 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0137 -2.6150 -0.0001 11 6 4.2763 -3.3565 -1.0913 12 6 4.7224 -4.6171 -0.6324 13 6 4.7052 -4.5709 0.7118 14 7 5.0894 -5.6741 1.6211 15 8 5.4619 -6.7393 1.1626 16 8 5.0339 -5.5164 2.8276 17 8 4.2756 -3.3556 1.0892 18 1 -0.4850 0.8401 0.0004 19 1 3.8745 -0.6809 0.8905 20 1 3.8752 -0.6797 -0.8895 21 1 4.1680 -3.0477 -2.1206 22 1 5.0198 -5.4562 -1.2437 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220159176.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:17 Heat of formation + Delta-G solvation = -4.976726 kcal Electronic energy + Delta-G solvation = -11810.583528 eV Core-core repulsion = 9335.519042 eV Total energy + Delta-G solvation = -2475.064486 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.35860 -43.08722 -37.91408 -35.72652 -34.58425 -33.33762 -30.48789 -27.14818 -24.55656 -23.35418 -22.05468 -20.73709 -19.91086 -19.33883 -18.99826 -17.24949 -17.11398 -16.03059 -15.01236 -14.89118 -14.27761 -14.22217 -13.71868 -13.02249 -12.83190 -12.61766 -12.52935 -12.44902 -12.00469 -11.79150 -11.48681 -10.88019 -10.03898 -8.39586 -6.51586 -1.23751 -0.47955 0.48630 1.22678 1.38537 1.41667 1.51365 1.88956 2.29816 2.95196 3.41877 3.59740 3.91389 4.38159 4.51877 4.68743 4.75168 4.98531 5.11357 5.32369 5.54439 6.04518 6.40749 6.53560 7.12820 8.76320 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.067031 B = 0.008261 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.618820 B = 3388.666165 C = 3458.380983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.252 1.252 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.545 4.545 8 H 0.029 0.971 9 C 0.049 3.951 10 C 0.110 3.890 11 C -0.225 4.225 12 C -0.036 4.036 13 C -0.053 4.053 14 N 0.077 4.923 15 O -0.106 6.106 16 O -0.210 6.210 17 O -0.182 6.182 18 H 0.273 0.727 19 H 0.051 0.949 20 H 0.096 0.904 21 H 0.204 0.796 22 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -3.989 -4.180 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.176 1.176 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.582 4.582 8 H 0.048 0.952 9 C 0.012 3.988 10 C 0.057 3.943 11 C -0.244 4.244 12 C -0.057 4.057 13 C -0.186 4.186 14 N 0.591 4.409 15 O -0.331 6.331 16 O -0.411 6.411 17 O -0.079 6.079 18 H 0.082 0.918 19 H 0.069 0.931 20 H 0.114 0.886 21 H 0.221 0.779 22 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.707 -3.245 -4.184 11.944 hybrid contribution -0.310 0.225 0.590 0.704 sum 10.397 -3.019 -3.594 11.407 Atomic orbital electron populations 1.70030 1.08589 1.28944 1.50323 1.25964 0.95653 1.03605 0.93016 0.85623 0.79512 0.77289 0.80130 1.17567 1.21183 1.16309 1.20923 0.89718 0.93746 1.53846 0.95226 1.18673 0.94844 0.83836 1.01416 1.23934 0.92261 0.95422 0.82722 1.22177 1.08184 0.92289 1.01768 1.22296 0.93640 1.00504 0.89299 1.22416 1.21674 0.85391 0.89082 1.42197 0.97976 1.00050 1.00637 1.94504 1.47123 1.10618 1.80813 1.94620 1.60805 1.88751 0.96931 1.83940 1.65913 1.20483 1.37590 0.91813 0.93110 0.88631 0.77875 0.76595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 13.96 21.45 0.30 -55.18 14 2 C 0.02 0.90 5.47 84.66 0.46 1.36 14 3 Si 0.95 38.81 27.47 68.60 1.88 40.69 14 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 14 5 H -0.29 -11.84 7.11 99.48 0.71 -11.13 14 6 H -0.24 -8.81 6.54 99.48 0.65 -8.16 14 7 C -0.54 -28.91 9.65 25.60 0.25 -28.66 14 8 H 0.03 1.80 7.98 -2.91 -0.02 1.77 14 9 C 0.05 2.01 4.58 29.10 0.13 2.15 14 10 C 0.11 4.13 6.51 24.84 0.16 4.29 14 11 C -0.23 -6.54 10.81 22.19 0.24 -6.30 14 12 C -0.04 -0.97 10.57 22.19 0.23 -0.74 14 13 C -0.05 -1.87 8.24 81.07 0.67 -1.21 14 14 N 0.08 2.73 4.46 -154.75 -0.69 2.04 14 15 O -0.11 -3.33 19.01 18.88 0.36 -2.98 14 16 O -0.21 -8.27 19.26 21.67 0.42 -7.85 14 17 O -0.18 -7.44 10.65 2.09 0.02 -7.42 14 18 H 0.27 14.90 8.31 -92.71 -0.77 14.13 14 19 H 0.05 2.06 7.20 -2.39 -0.02 2.04 14 20 H 0.10 3.30 7.57 -2.39 -0.02 3.28 14 21 H 0.20 4.49 8.06 -2.91 -0.02 4.47 14 22 H 0.22 3.73 8.06 -2.91 -0.02 3.71 14 Total: -1.00 -64.06 218.54 5.63 -58.43 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.19 Total: 1.37 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 2.15 Total: -29.11 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.39 Total: -53.14 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.80 Total: -18.24 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.88 Total: 40.69 kcal Total: -64.06 5.63 -58.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220159176.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.457 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds