Wall clock time and date at job start Mon Mar 30 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31150 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47238 * 269.99926 * 3 2 1 5 5 H 1.48500 * 109.47029 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47142 * 150.00069 * 3 2 1 7 7 C 1.39188 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.36434 * 124.40234 * 180.02562 * 9 7 2 11 11 C 1.35900 * 107.26509 * 179.70308 * 10 9 7 12 12 N 1.40051 * 127.62638 * 180.27557 * 11 10 9 13 13 C 1.46726 * 104.74974 * 0.37983 * 11 10 9 14 14 C 1.47241 * 126.85271 * 179.87679 * 13 11 10 15 15 O 1.21543 * 120.00073 * 359.71172 * 14 13 11 16 16 O 1.34799 * 120.00021 * 179.43315 * 14 13 11 17 17 N 1.28294 * 124.40673 * 359.97438 * 9 7 2 18 18 H 0.96996 * 119.99820 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.36673 * 359.96336 * 10 9 7 20 20 H 0.97001 * 119.99852 * 180.13330 * 12 11 10 21 21 H 0.97000 * 120.00295 * 0.12618 * 12 11 10 22 22 H 0.96699 * 116.99838 * 180.27026 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2455 1.6177 0.0000 4 1 2.4930 2.0464 -1.4001 5 1 1.4429 2.6526 0.7001 6 1 3.5431 1.4401 0.7000 7 6 2.0074 -1.2054 -0.0005 8 1 3.0874 -1.2055 -0.0001 9 7 1.3218 -2.3927 -0.0005 10 6 1.9113 -3.6232 -0.0005 11 6 0.9151 -4.5476 0.0062 12 7 1.0429 -5.9422 0.0140 13 6 -0.3239 -3.7616 0.0008 14 6 -1.7007 -4.2835 0.0022 15 8 -1.8959 -5.4832 0.0031 16 8 -2.7447 -3.4308 0.0082 17 7 0.0427 -2.4912 0.0004 18 1 -0.4850 0.8400 -0.0004 19 1 2.9722 -3.8250 -0.0011 20 1 0.2506 -6.5018 0.0164 21 1 1.9237 -6.3486 0.0170 22 1 -3.6297 -3.8204 0.0130 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229716834.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:25 Heat of formation + Delta-G solvation = -14.273374 kcal Electronic energy + Delta-G solvation = -12165.600561 eV Core-core repulsion = 9722.425693 eV Total energy + Delta-G solvation = -2443.174868 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.69578 -38.71670 -35.11605 -34.15791 -32.83937 -30.33027 -27.63232 -25.76817 -22.93656 -20.11502 -19.53300 -17.89214 -16.92284 -16.08168 -15.17267 -14.96450 -14.77524 -14.65398 -13.73533 -13.63554 -12.44917 -11.81950 -11.54166 -11.32160 -11.09870 -10.66372 -10.57162 -10.34450 -9.74723 -9.19736 -8.91315 -7.96203 -6.63991 -6.52825 -4.46627 2.68452 2.98666 3.02514 3.07996 3.71351 3.75950 4.07888 4.50356 4.57017 4.99217 5.26873 6.07639 6.22215 6.77193 6.78356 7.03531 7.28113 7.47574 7.83832 8.36582 8.56093 8.73721 8.91783 9.20069 9.99811 10.28185 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.011877 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.783730 B = 2356.990025 C = 2905.924171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.048 3.952 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.334 4.334 8 H 0.123 0.877 9 N -0.047 5.047 10 C -0.194 4.194 11 C 0.145 3.855 12 N -0.865 5.865 13 C -0.184 4.184 14 C 0.580 3.420 15 O -0.567 6.567 16 O -0.504 6.504 17 N -0.193 5.193 18 H 0.279 0.721 19 H 0.154 0.846 20 H 0.401 0.599 21 H 0.387 0.613 22 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -1.851 0.027 2.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.141 0.859 9 N 0.169 4.831 10 C -0.333 4.333 11 C 0.034 3.966 12 N -0.411 5.411 13 C -0.325 4.325 14 C 0.430 3.570 15 O -0.460 6.460 16 O -0.312 6.312 17 N -0.045 5.045 18 H 0.090 0.910 19 H 0.172 0.828 20 H 0.230 0.770 21 H 0.214 0.786 22 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.429 -0.826 0.030 1.650 hybrid contribution 0.227 -0.716 -0.002 0.751 sum 1.655 -1.542 0.029 2.263 Atomic orbital electron populations 1.70180 1.06237 1.28511 1.33297 1.25714 0.95732 1.00510 0.95220 0.85753 0.79427 0.79495 0.79106 1.19431 1.19961 1.18640 1.20122 0.92299 0.80107 1.54353 0.85900 1.41208 1.02321 1.04740 1.34791 1.21532 0.97509 0.84956 1.29331 1.18445 0.91481 0.84348 1.02302 1.41364 1.09409 1.01998 1.88321 1.20908 0.88811 0.90767 1.31996 1.19309 0.83829 0.82781 0.71105 1.90703 1.86210 1.16794 1.52313 1.84816 1.17319 1.42706 1.86313 1.74474 0.94773 1.15779 1.19502 0.91038 0.82828 0.77025 0.78614 0.75231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.32 11.75 55.50 0.65 -19.66 14 2 C 0.05 1.18 5.49 -17.49 -0.10 1.08 14 3 Si 0.94 18.10 29.55 -169.99 -5.02 13.07 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.71 14 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 14 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 7 C -0.33 -8.52 10.14 -14.85 -0.15 -8.67 14 8 H 0.12 2.77 7.83 -52.48 -0.41 2.36 14 9 N -0.05 -1.26 3.42 -11.38 -0.04 -1.30 14 10 C -0.19 -4.62 11.42 -16.34 -0.19 -4.81 14 11 C 0.15 3.46 7.58 -81.51 -0.62 2.84 14 12 N -0.86 -16.55 9.15 33.55 0.31 -16.24 14 13 C -0.18 -4.88 7.36 -80.61 -0.59 -5.48 14 14 C 0.58 14.02 8.33 34.39 0.29 14.31 14 15 O -0.57 -13.44 16.41 -19.30 -0.32 -13.76 14 16 O -0.50 -10.77 13.44 -40.76 -0.55 -11.32 14 17 N -0.19 -5.53 9.67 34.49 0.33 -5.20 14 18 H 0.28 6.81 8.30 -40.82 -0.34 6.48 14 19 H 0.15 3.09 8.06 -52.49 -0.42 2.67 14 20 H 0.40 7.64 7.54 -40.82 -0.31 7.33 14 21 H 0.39 6.00 8.96 -40.82 -0.37 5.63 14 22 H 0.39 5.79 9.11 45.56 0.42 6.20 14 LS Contribution 214.84 15.07 3.24 3.24 Total: -1.00 -32.24 214.84 -2.98 -35.22 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.23 Total: 16.66 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.36 Total: -0.72 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 1.25 Total: -42.40 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.86 Total: -25.08 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.24 -2.98 -35.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229716834.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.950 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds