Wall clock time and date at job start Mon Mar 30 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31150 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47238 * 269.99926 * 3 2 1 5 5 H 1.48500 * 109.47029 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47142 * 150.00069 * 3 2 1 7 7 C 1.39188 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.36434 * 124.40234 * 180.02562 * 9 7 2 11 11 C 1.35900 * 107.26509 * 179.70308 * 10 9 7 12 12 N 1.40051 * 127.62638 * 180.27557 * 11 10 9 13 13 C 1.46726 * 104.74974 * 0.37983 * 11 10 9 14 14 C 1.47241 * 126.85271 * 179.87679 * 13 11 10 15 15 O 1.21543 * 120.00073 * 359.71172 * 14 13 11 16 16 O 1.34799 * 120.00021 * 179.43315 * 14 13 11 17 17 N 1.28294 * 124.40673 * 359.97438 * 9 7 2 18 18 H 0.96996 * 119.99820 * 0.02562 * 1 2 3 19 19 H 1.07999 * 126.36673 * 359.96336 * 10 9 7 20 20 H 0.97001 * 119.99852 * 180.13330 * 12 11 10 21 21 H 0.97000 * 120.00295 * 0.12618 * 12 11 10 22 22 H 0.96699 * 116.99838 * 180.27026 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2455 1.6177 0.0000 4 1 2.4930 2.0464 -1.4001 5 1 1.4429 2.6526 0.7001 6 1 3.5431 1.4401 0.7000 7 6 2.0074 -1.2054 -0.0005 8 1 3.0874 -1.2055 -0.0001 9 7 1.3218 -2.3927 -0.0005 10 6 1.9113 -3.6232 -0.0005 11 6 0.9151 -4.5476 0.0062 12 7 1.0429 -5.9422 0.0140 13 6 -0.3239 -3.7616 0.0008 14 6 -1.7007 -4.2835 0.0022 15 8 -1.8959 -5.4832 0.0031 16 8 -2.7447 -3.4308 0.0082 17 7 0.0427 -2.4912 0.0004 18 1 -0.4850 0.8400 -0.0004 19 1 2.9722 -3.8250 -0.0011 20 1 0.2506 -6.5018 0.0164 21 1 1.9237 -6.3486 0.0170 22 1 -3.6297 -3.8204 0.0130 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229716834.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:25 Heat of formation + Delta-G solvation = -39.645458 kcal Electronic energy + Delta-G solvation = -12166.700778 eV Core-core repulsion = 9722.425693 eV Total energy + Delta-G solvation = -2444.275084 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.58931 -40.52308 -36.88478 -35.95763 -34.62619 -32.24969 -29.44525 -27.65644 -24.80901 -21.94972 -21.38251 -19.75095 -18.70638 -17.93156 -16.83180 -16.72124 -16.63082 -16.39971 -15.61781 -15.30364 -14.22167 -13.55766 -13.33110 -12.94766 -12.89535 -12.41380 -12.05889 -12.00740 -11.58182 -10.99676 -10.84158 -9.92143 -8.48817 -8.28261 -6.40738 0.80461 1.44636 1.45959 1.64092 1.92684 2.13874 2.39406 2.60266 2.85309 3.11835 3.55795 4.24290 4.50513 4.94232 5.00662 5.20284 5.56123 5.74967 5.98584 6.55066 6.81675 7.18467 7.25677 7.37621 8.06972 8.46537 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050097 B = 0.011877 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.783730 B = 2356.990025 C = 2905.924171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.000 4.000 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.361 4.361 8 H 0.148 0.852 9 N -0.063 5.063 10 C -0.202 4.202 11 C 0.147 3.853 12 N -0.847 5.847 13 C -0.222 4.222 14 C 0.579 3.421 15 O -0.569 6.569 16 O -0.508 6.508 17 N -0.239 5.239 18 H 0.282 0.718 19 H 0.189 0.811 20 H 0.403 0.597 21 H 0.407 0.593 22 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -1.617 0.051 3.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.214 4.214 3 Si 0.840 3.160 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.495 4.495 8 H 0.166 0.834 9 N 0.153 4.847 10 C -0.342 4.342 11 C 0.034 3.966 12 N -0.394 5.394 13 C -0.363 4.363 14 C 0.429 3.571 15 O -0.463 6.463 16 O -0.320 6.320 17 N -0.091 5.091 18 H 0.093 0.907 19 H 0.206 0.794 20 H 0.232 0.768 21 H 0.237 0.763 22 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 2.764 -0.653 0.055 2.841 hybrid contribution -0.223 -0.861 -0.011 0.890 sum 2.541 -1.515 0.043 2.959 Atomic orbital electron populations 1.70337 1.08478 1.29807 1.34545 1.26935 0.96449 1.04354 0.93689 0.84542 0.78343 0.73716 0.79359 1.18777 1.19997 1.16706 1.20932 0.93704 0.80389 1.54457 0.83433 1.41569 1.02278 1.06033 1.34777 1.22130 0.99110 0.84060 1.28891 1.18643 0.90599 0.86062 1.01278 1.41281 1.10768 1.00188 1.87208 1.21481 0.90687 0.91100 1.33028 1.19149 0.83923 0.82859 0.71208 1.90679 1.86397 1.16616 1.52608 1.84749 1.18674 1.42735 1.85799 1.74398 0.95971 1.17155 1.21602 0.90748 0.79439 0.76781 0.76295 0.72095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.88 11.75 21.69 0.25 -43.63 14 2 C 0.00 0.02 5.49 85.02 0.47 0.49 14 3 Si 1.02 36.10 29.55 68.60 2.03 38.13 14 4 H -0.26 -8.97 7.11 99.48 0.71 -8.27 14 5 H -0.28 -9.62 7.11 99.48 0.71 -8.92 14 6 H -0.24 -7.83 7.11 99.48 0.71 -7.12 14 7 C -0.36 -18.18 10.14 84.10 0.85 -17.33 14 8 H 0.15 6.38 7.83 -2.91 -0.02 6.36 14 9 N -0.06 -3.39 3.42 -189.90 -0.65 -4.04 14 10 C -0.20 -9.41 11.42 83.43 0.95 -8.46 14 11 C 0.15 6.85 7.58 39.50 0.30 7.15 14 12 N -0.85 -30.84 9.15 -47.76 -0.44 -31.28 14 13 C -0.22 -11.88 7.36 43.67 0.32 -11.56 14 14 C 0.58 27.98 8.33 70.19 0.58 28.57 14 15 O -0.57 -26.55 16.41 19.70 0.32 -26.23 14 16 O -0.51 -21.68 13.44 -57.11 -0.77 -22.45 14 17 N -0.24 -13.89 9.67 -44.79 -0.43 -14.32 14 18 H 0.28 14.05 8.30 -92.71 -0.77 13.28 14 19 H 0.19 7.09 8.06 -2.91 -0.02 7.07 14 20 H 0.40 14.67 7.54 -92.71 -0.70 13.97 14 21 H 0.41 11.55 8.96 -92.71 -0.83 10.72 14 22 H 0.42 11.98 9.11 -74.06 -0.67 11.30 14 Total: -1.00 -69.45 214.84 2.90 -66.56 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.90 Total: 38.40 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 3.48 Total: -1.14 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -1.26 Total: -93.26 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.44 Total: -48.68 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -69.45 2.90 -66.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229716834.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.910 kcal (2) G-P(sol) polarization free energy of solvation -69.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds