Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21344 * 120.00325 * 2 1 4 4 C 1.46579 * 120.00349 * 179.97438 * 2 1 3 5 5 N 1.30204 * 125.07310 * 179.97438 * 4 2 1 6 6 C 1.32061 * 116.11181 * 179.97438 * 5 4 2 7 7 C 1.41233 * 122.77409 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00309 * 180.02562 * 7 6 5 9 9 C 1.39840 * 119.99808 * 0.02854 * 7 6 5 10 10 N 1.30912 * 120.00335 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47190 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47205 * 120.00121 * 11 9 7 14 14 H 1.48501 * 109.47028 * 240.00409 * 11 9 7 15 15 C 1.38612 * 114.45593 * 0.02562 * 6 5 4 16 16 S 1.71008 * 108.82361 * 359.97438 * 15 6 5 17 17 H 1.08995 * 109.47284 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47279 * 300.00444 * 1 2 3 19 19 H 1.09002 * 109.47138 * 59.99908 * 1 2 3 20 20 H 0.96998 * 120.00657 * 179.97438 * 10 9 7 21 21 H 1.07997 * 125.58320 * 179.97438 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2399 -1.2694 0.0006 5 7 3.5368 -1.3844 0.0001 6 6 4.0110 -2.6170 0.0013 7 6 5.3938 -2.9041 0.0005 8 1 5.7324 -3.9297 0.0011 9 6 6.3246 -1.8605 -0.0010 10 7 5.9143 -0.6174 -0.0022 11 14 8.1537 -2.2403 -0.0013 12 1 8.3537 -3.7118 0.0008 13 1 8.7802 -1.6568 -1.2147 14 1 8.7811 -1.6542 1.2103 15 6 3.0394 -3.6056 0.0023 16 16 1.4982 -2.8646 0.0023 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 6.5599 0.1065 -0.0029 21 1 3.2254 -4.6694 0.0029 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238156983.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = -0.346032 kcal Electronic energy + Delta-G solvation = -10035.454398 eV Core-core repulsion = 8003.343585 eV Total energy + Delta-G solvation = -2032.110813 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.81569 -37.39429 -33.22260 -30.57910 -28.96348 -25.75639 -24.26105 -20.36164 -18.47867 -17.63407 -15.81856 -15.26771 -14.58160 -14.51272 -14.27326 -13.18822 -12.66510 -12.22725 -11.88068 -11.69509 -11.60928 -11.23715 -10.79323 -10.51667 -9.80487 -9.38838 -9.37784 -8.17575 -8.16860 -7.59429 -6.57025 -4.45243 1.41289 2.68260 2.90503 3.08658 3.14004 3.18675 3.40974 3.96481 4.30082 4.46935 5.39567 5.40723 5.66474 5.83617 6.19281 6.50427 6.88848 7.12609 7.27681 7.97760 8.17201 8.41694 8.78878 9.44280 10.29545 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.050996 B = 0.012332 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.935056 B = 2270.010060 C = 2803.801442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.428 3.572 3 O -0.440 6.440 4 C -0.047 4.047 5 N -0.337 5.337 6 C 0.214 3.786 7 C -0.430 4.430 8 H 0.088 0.912 9 C 0.067 3.933 10 N -0.741 5.741 11 Si 0.914 3.086 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.273 1.273 15 C -0.431 4.431 16 S 0.021 5.979 17 H 0.080 0.920 18 H 0.093 0.907 19 H 0.093 0.907 20 H 0.277 0.723 21 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -1.167 0.001 6.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.300 3.700 3 O -0.312 6.312 4 C -0.324 4.324 5 N -0.057 5.057 6 C 0.088 3.912 7 C -0.464 4.464 8 H 0.106 0.894 9 C -0.156 4.156 10 N -0.364 5.364 11 Si 0.738 3.262 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.572 4.572 16 S 0.268 5.732 17 H 0.099 0.901 18 H 0.112 0.888 19 H 0.112 0.888 20 H 0.088 0.912 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.435 -0.216 0.001 6.439 hybrid contribution 1.811 -0.630 0.000 1.917 sum -4.624 -0.846 0.001 4.701 Atomic orbital electron populations 1.22117 0.93340 1.04528 1.04624 1.21591 0.90572 0.85934 0.71885 1.90558 1.72010 1.33106 1.35489 1.27903 0.93966 0.96938 1.13562 1.67291 1.07290 1.24403 1.06737 1.18069 0.95147 0.83535 0.94464 1.19074 0.87921 0.94394 1.45001 0.89367 1.26062 1.01628 0.94677 0.93270 1.70077 1.36091 0.99396 1.30796 0.86167 0.81611 0.79847 0.78573 1.18396 1.19806 1.19812 1.25805 0.93186 1.02651 1.35576 1.82375 1.12925 1.03205 1.74685 0.90077 0.88801 0.88796 0.91164 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 10.29 36.00 0.37 -2.25 14 2 C 0.43 8.90 7.23 -30.95 -0.22 8.68 14 3 O -0.44 -10.68 17.81 5.50 0.10 -10.58 14 4 C -0.05 -1.14 7.35 -14.88 -0.11 -1.25 14 5 N -0.34 -9.59 8.37 -9.42 -0.08 -9.67 14 6 C 0.21 5.99 6.46 -86.49 -0.56 5.43 14 7 C -0.43 -11.86 9.24 -37.85 -0.35 -12.21 14 8 H 0.09 2.27 7.84 -52.49 -0.41 1.86 14 9 C 0.07 1.78 5.49 -17.34 -0.10 1.69 14 10 N -0.74 -20.92 11.70 55.54 0.65 -20.27 14 11 Si 0.91 19.28 29.56 -169.99 -5.02 14.26 14 12 H -0.26 -5.33 7.11 56.52 0.40 -4.92 14 13 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 14 H -0.27 -5.67 7.11 56.52 0.40 -5.26 14 15 C -0.43 -10.65 11.03 30.87 0.34 -10.31 14 16 S 0.02 0.43 21.74 -107.50 -2.34 -1.91 14 17 H 0.08 1.04 6.70 -51.93 -0.35 0.69 14 18 H 0.09 1.11 8.14 -51.93 -0.42 0.69 14 19 H 0.09 1.11 8.14 -51.93 -0.42 0.69 14 20 H 0.28 7.13 8.30 -40.82 -0.34 6.79 14 21 H 0.14 3.32 8.06 -52.49 -0.42 2.90 14 LS Contribution 214.77 15.07 3.24 3.24 Total: -1.00 -31.73 214.77 -5.24 -36.97 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -1.16 Total: -1.84 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.63 Total: -10.21 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.57 Total: -29.94 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.10 Total: -10.58 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.34 Total: -1.91 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.73 -5.24 -36.97 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238156983.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.627 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds