Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21344 * 120.00325 * 2 1 4 4 C 1.46579 * 120.00349 * 179.97438 * 2 1 3 5 5 N 1.30204 * 125.07310 * 179.97438 * 4 2 1 6 6 C 1.32061 * 116.11181 * 179.97438 * 5 4 2 7 7 C 1.41233 * 122.77409 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00309 * 180.02562 * 7 6 5 9 9 C 1.39840 * 119.99808 * 0.02854 * 7 6 5 10 10 N 1.30912 * 120.00335 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47190 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47205 * 120.00121 * 11 9 7 14 14 H 1.48501 * 109.47028 * 240.00409 * 11 9 7 15 15 C 1.38612 * 114.45593 * 0.02562 * 6 5 4 16 16 S 1.71008 * 108.82361 * 359.97438 * 15 6 5 17 17 H 1.08995 * 109.47284 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.47279 * 300.00444 * 1 2 3 19 19 H 1.09002 * 109.47138 * 59.99908 * 1 2 3 20 20 H 0.96998 * 120.00657 * 179.97438 * 10 9 7 21 21 H 1.07997 * 125.58320 * 179.97438 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2399 -1.2694 0.0006 5 7 3.5368 -1.3844 0.0001 6 6 4.0110 -2.6170 0.0013 7 6 5.3938 -2.9041 0.0005 8 1 5.7324 -3.9297 0.0011 9 6 6.3246 -1.8605 -0.0010 10 7 5.9143 -0.6174 -0.0022 11 14 8.1537 -2.2403 -0.0013 12 1 8.3537 -3.7118 0.0008 13 1 8.7802 -1.6568 -1.2147 14 1 8.7811 -1.6542 1.2103 15 6 3.0394 -3.6056 0.0023 16 16 1.4982 -2.8646 0.0023 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 6.5599 0.1065 -0.0029 21 1 3.2254 -4.6694 0.0029 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238156983.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = -22.742816 kcal Electronic energy + Delta-G solvation = -10036.425596 eV Core-core repulsion = 8003.343585 eV Total energy + Delta-G solvation = -2033.082011 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.57362 -39.25037 -35.16334 -32.17047 -30.66259 -27.72871 -25.99017 -22.17527 -20.28015 -19.51890 -17.60137 -17.11579 -16.32656 -16.19516 -15.87291 -14.98030 -14.46003 -13.79400 -13.50121 -13.28307 -13.03411 -12.90721 -12.68194 -12.24901 -11.62300 -11.26693 -11.08767 -10.04111 -9.99990 -9.50008 -8.48145 -6.46791 -0.38932 0.87168 1.19686 1.34719 1.49685 1.51449 1.54952 2.20463 2.40770 2.95820 3.40943 4.13104 4.55927 4.65295 4.65467 4.97446 5.10073 5.18031 5.30443 6.06919 6.45001 6.48261 6.81290 7.58090 8.40663 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.050996 B = 0.012332 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.935056 B = 2270.010060 C = 2803.801442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.424 3.576 3 O -0.486 6.486 4 C -0.080 4.080 5 N -0.402 5.402 6 C 0.178 3.822 7 C -0.473 4.473 8 H 0.093 0.907 9 C 0.020 3.980 10 N -0.792 5.792 11 Si 0.994 3.006 12 H -0.249 1.249 13 H -0.267 1.267 14 H -0.267 1.267 15 C -0.447 4.447 16 S 0.147 5.853 17 H 0.096 0.904 18 H 0.123 0.877 19 H 0.123 0.877 20 H 0.279 0.721 21 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -2.079 0.002 8.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.361 6.361 4 C -0.355 4.355 5 N -0.123 5.123 6 C 0.051 3.949 7 C -0.508 4.508 8 H 0.111 0.889 9 C -0.198 4.198 10 N -0.416 5.416 11 Si 0.814 3.186 12 H -0.172 1.172 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.588 4.588 16 S 0.397 5.603 17 H 0.114 0.886 18 H 0.141 0.859 19 H 0.141 0.859 20 H 0.089 0.911 21 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.099 -1.163 0.002 8.182 hybrid contribution 2.046 -0.461 0.000 2.097 sum -6.052 -1.624 0.002 6.266 Atomic orbital electron populations 1.22160 0.87081 1.06358 1.07309 1.22694 0.93403 0.84043 0.69893 1.90538 1.73601 1.34213 1.37739 1.28838 0.93962 1.00288 1.12389 1.67307 1.09753 1.25151 1.10046 1.18521 0.96326 0.84535 0.95494 1.19447 0.88929 0.95074 1.47316 0.88925 1.27048 1.06701 0.94028 0.92025 1.70226 1.37791 1.00582 1.32981 0.84982 0.74834 0.80053 0.78715 1.17247 1.19190 1.19202 1.26383 0.95832 1.03424 1.33205 1.81682 1.08403 0.98996 1.71231 0.88559 0.85923 0.85918 0.91080 0.82428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 10.29 71.23 0.73 -3.35 14 2 C 0.42 17.19 7.23 27.86 0.20 17.39 14 3 O -0.49 -23.89 17.81 -3.23 -0.06 -23.94 14 4 C -0.08 -3.79 7.35 87.11 0.64 -3.15 14 5 N -0.40 -23.44 8.37 -183.72 -1.54 -24.98 14 6 C 0.18 10.22 6.46 39.93 0.26 10.47 14 7 C -0.47 -26.96 9.24 23.39 0.22 -26.75 14 8 H 0.09 4.91 7.84 -2.91 -0.02 4.89 14 9 C 0.02 1.12 5.49 85.22 0.47 1.58 14 10 N -0.79 -46.75 11.70 21.81 0.26 -46.49 14 11 Si 0.99 40.58 29.56 68.60 2.03 42.60 14 12 H -0.25 -9.56 7.11 99.48 0.71 -8.85 14 13 H -0.27 -10.51 7.11 99.48 0.71 -9.80 14 14 H -0.27 -10.52 7.11 99.48 0.71 -9.81 14 15 C -0.45 -21.70 11.03 67.91 0.75 -20.95 14 16 S 0.15 5.70 21.74 -56.49 -1.23 4.47 14 17 H 0.10 1.97 6.70 -2.39 -0.02 1.95 14 18 H 0.12 2.32 8.14 -2.39 -0.02 2.30 14 19 H 0.12 2.32 8.14 -2.39 -0.02 2.30 14 20 H 0.28 15.07 8.30 -92.71 -0.77 14.30 14 21 H 0.16 7.03 8.06 -2.91 -0.02 7.00 14 Total: -1.00 -72.79 214.77 3.98 -68.81 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.25 Total: 4.28 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.27 Total: -24.75 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -1.28 Total: -71.47 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.23 Total: 4.47 kcal Total: -72.79 3.98 -68.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238156983.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.066 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds