Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21408 * 120.00569 * 2 1 4 4 C 1.46216 * 120.00178 * 179.97438 * 2 1 3 5 5 N 1.31290 * 125.13142 * 0.03403 * 4 2 1 6 6 C 1.29275 * 117.67912 * 179.97438 * 5 4 2 7 7 C 1.39504 * 114.86748 * 359.97438 * 6 5 4 8 8 C 1.39491 * 126.13024 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00165 * 0.02562 * 8 7 6 10 10 C 1.40683 * 119.99894 * 179.97438 * 8 7 6 11 11 N 1.30460 * 119.99997 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00015 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47184 * 60.00289 * 12 10 8 14 14 H 1.48506 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46986 * 300.00035 * 12 10 8 16 16 S 1.76089 * 125.14060 * 179.71935 * 4 2 1 17 17 H 1.08996 * 109.47657 * 270.00203 * 1 2 3 18 18 H 1.09000 * 109.46818 * 30.00518 * 1 2 3 19 19 H 1.09004 * 109.47240 * 149.99856 * 1 2 3 20 20 H 1.07997 * 122.56753 * 179.97438 * 6 5 4 21 21 H 0.97000 * 119.99908 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1141 1.0514 0.0000 4 6 2.2381 -1.2662 0.0006 5 7 1.6860 -2.4574 0.0005 6 6 2.4721 -3.4837 0.0005 7 6 3.8336 -3.1797 0.0001 8 6 4.8818 -4.1000 0.0006 9 1 4.6706 -5.1591 0.0009 10 6 6.2143 -3.6485 -0.0005 11 7 6.4695 -2.3691 -0.0014 12 14 7.6180 -4.8809 -0.0006 13 1 7.5274 -5.7342 -1.2126 14 1 8.9137 -4.1554 -0.0011 15 1 7.5288 -5.7329 1.2125 16 16 3.9918 -1.4240 -0.0064 17 1 -0.3634 0.0000 1.0276 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3634 -0.8900 -0.5139 20 1 2.1031 -4.4986 0.0008 21 1 7.3882 -2.0579 -0.0017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238158283.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = -31.975909 kcal Electronic energy + Delta-G solvation = -9897.653221 eV Core-core repulsion = 7864.170833 eV Total energy + Delta-G solvation = -2033.482388 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.04525 -37.02035 -34.61863 -30.34115 -29.08364 -25.87634 -23.45834 -20.35591 -18.73923 -17.34415 -15.87196 -15.61007 -14.33681 -14.04991 -13.69269 -13.20362 -12.44032 -12.38508 -12.20913 -11.68545 -11.64004 -11.22242 -11.18478 -10.79328 -10.08260 -9.45175 -8.93256 -8.10348 -8.08711 -7.34353 -7.33071 -4.97166 1.88603 2.70437 2.72087 2.76544 3.27046 3.31530 3.39752 3.86188 4.24122 4.88947 5.43713 5.91613 6.12034 6.20204 6.34015 6.49110 6.76062 6.96730 7.35055 7.58038 7.89787 8.02564 8.67542 9.35095 9.51358 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.081143 B = 0.010650 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.986542 B = 2628.598055 C = 2958.437791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.439 3.561 3 O -0.517 6.517 4 C -0.287 4.287 5 N -0.382 5.382 6 C -0.133 4.133 7 C -0.009 4.009 8 C -0.324 4.324 9 H 0.108 0.892 10 C 0.040 3.960 11 N -0.735 5.735 12 Si 0.945 3.055 13 H -0.256 1.256 14 H -0.269 1.269 15 H -0.256 1.256 16 S 0.129 5.871 17 H 0.081 0.919 18 H 0.068 0.932 19 H 0.082 0.918 20 H 0.143 0.857 21 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -3.372 0.016 3.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.323 3.677 3 O -0.399 6.399 4 C -0.539 4.539 5 N -0.097 5.097 6 C -0.300 4.300 7 C -0.134 4.134 8 C -0.363 4.363 9 H 0.126 0.874 10 C -0.187 4.187 11 N -0.360 5.360 12 Si 0.767 3.233 13 H -0.180 1.180 14 H -0.194 1.194 15 H -0.180 1.180 16 S 0.382 5.618 17 H 0.099 0.901 18 H 0.087 0.913 19 H 0.101 0.899 20 H 0.161 0.839 21 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.787 -1.635 0.006 2.422 hybrid contribution 0.250 -1.541 0.027 1.562 sum 2.037 -3.177 0.032 3.774 Atomic orbital electron populations 1.21949 0.95212 1.03181 1.03216 1.20831 0.90198 0.85948 0.70732 1.90458 1.72280 1.33789 1.43360 1.26339 0.96792 0.94659 1.36114 1.65312 1.40418 0.98179 1.05828 1.21610 0.87844 0.96915 1.23631 1.23766 0.96856 0.96626 0.96160 1.19563 0.89083 0.95665 1.31962 0.87378 1.26584 1.01985 0.96937 0.93209 1.68890 1.25054 1.15424 1.26618 0.85682 0.77273 0.79568 0.80788 1.17955 1.19352 1.17962 1.85156 1.02015 1.00613 1.74002 0.90093 0.91305 0.89891 0.83926 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 10.12 36.00 0.36 -2.94 14 2 C 0.44 10.63 7.22 -31.11 -0.22 10.40 14 3 O -0.52 -13.59 17.66 5.45 0.10 -13.50 14 4 C -0.29 -7.54 7.35 -14.58 -0.11 -7.65 14 5 N -0.38 -9.82 10.02 -10.68 -0.11 -9.93 14 6 C -0.13 -3.31 11.36 -18.16 -0.21 -3.51 14 7 C -0.01 -0.23 6.26 -38.64 -0.24 -0.47 14 8 C -0.32 -7.44 9.33 -38.19 -0.36 -7.79 14 9 H 0.11 2.21 7.86 -52.49 -0.41 1.79 14 10 C 0.04 0.86 5.51 -17.21 -0.09 0.76 14 11 N -0.74 -16.65 10.73 55.59 0.60 -16.06 14 12 Si 0.95 15.42 29.57 -169.99 -5.03 10.40 14 13 H -0.26 -4.10 7.11 56.52 0.40 -3.70 14 14 H -0.27 -4.29 7.11 56.52 0.40 -3.89 14 15 H -0.26 -4.10 7.11 56.52 0.40 -3.70 14 16 S 0.13 3.42 20.25 -107.50 -2.18 1.24 14 17 H 0.08 1.37 8.14 -51.93 -0.42 0.95 14 18 H 0.07 1.14 8.14 -51.93 -0.42 0.72 14 19 H 0.08 1.53 7.85 -51.93 -0.41 1.12 14 20 H 0.14 3.16 8.06 -52.49 -0.42 2.74 14 21 H 0.31 6.15 8.29 -40.82 -0.34 5.82 14 LS Contribution 215.03 15.07 3.24 3.24 Total: -1.00 -28.49 215.03 -5.47 -33.96 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -1.22 Total: 1.84 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.87 Total: -11.20 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.49 Total: -25.99 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.10 Total: -13.50 kcal Atomic # 14 Polarization: 15.42 SS G_CDS: -5.03 Total: 10.40 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.18 Total: 1.24 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -28.49 -5.47 -33.96 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238158283.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.981 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds