Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21408 * 120.00569 * 2 1 4 4 C 1.46216 * 120.00178 * 179.97438 * 2 1 3 5 5 N 1.31290 * 125.13142 * 0.03403 * 4 2 1 6 6 C 1.29275 * 117.67912 * 179.97438 * 5 4 2 7 7 C 1.39504 * 114.86748 * 359.97438 * 6 5 4 8 8 C 1.39491 * 126.13024 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00165 * 0.02562 * 8 7 6 10 10 C 1.40683 * 119.99894 * 179.97438 * 8 7 6 11 11 N 1.30460 * 119.99997 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00015 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47184 * 60.00289 * 12 10 8 14 14 H 1.48506 * 109.47199 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46986 * 300.00035 * 12 10 8 16 16 S 1.76089 * 125.14060 * 179.71935 * 4 2 1 17 17 H 1.08996 * 109.47657 * 270.00203 * 1 2 3 18 18 H 1.09000 * 109.46818 * 30.00518 * 1 2 3 19 19 H 1.09004 * 109.47240 * 149.99856 * 1 2 3 20 20 H 1.07997 * 122.56753 * 179.97438 * 6 5 4 21 21 H 0.97000 * 119.99908 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1141 1.0514 0.0000 4 6 2.2381 -1.2662 0.0006 5 7 1.6860 -2.4574 0.0005 6 6 2.4721 -3.4837 0.0005 7 6 3.8336 -3.1797 0.0001 8 6 4.8818 -4.1000 0.0006 9 1 4.6706 -5.1591 0.0009 10 6 6.2143 -3.6485 -0.0005 11 7 6.4695 -2.3691 -0.0014 12 14 7.6180 -4.8809 -0.0006 13 1 7.5274 -5.7342 -1.2126 14 1 8.9137 -4.1554 -0.0011 15 1 7.5288 -5.7329 1.2125 16 16 3.9918 -1.4240 -0.0064 17 1 -0.3634 0.0000 1.0276 18 1 -0.3633 0.8900 -0.5139 19 1 -0.3634 -0.8900 -0.5139 20 1 2.1031 -4.4986 0.0008 21 1 7.3882 -2.0579 -0.0017 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238158283.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = -50.516866 kcal Electronic energy + Delta-G solvation = -9898.457217 eV Core-core repulsion = 7864.170833 eV Total energy + Delta-G solvation = -2034.286384 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.90497 -38.90485 -36.41159 -32.16436 -30.79886 -27.67057 -25.31237 -22.20555 -20.55773 -19.18321 -17.72335 -17.34353 -15.97386 -15.84863 -15.48660 -14.90441 -14.25214 -14.20955 -13.83483 -13.30979 -13.15213 -12.85808 -12.83627 -12.09594 -11.60137 -11.38922 -10.80045 -9.99405 -9.98613 -9.34592 -9.07946 -6.86421 0.03715 1.24897 1.34510 1.37630 1.57044 1.69753 1.90180 2.09076 2.48230 3.00976 3.69079 4.30073 4.54512 4.61649 4.70150 4.87826 4.96092 5.23442 5.52736 5.77217 6.05912 6.16564 6.85668 7.58120 7.68143 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.081143 B = 0.010650 C = 0.009462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.986542 B = 2628.598055 C = 2958.437791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.427 3.573 3 O -0.554 6.554 4 C -0.327 4.327 5 N -0.382 5.382 6 C -0.145 4.145 7 C -0.033 4.033 8 C -0.310 4.310 9 H 0.140 0.860 10 C -0.001 4.001 11 N -0.755 5.755 12 Si 1.028 2.972 13 H -0.245 1.245 14 H -0.263 1.263 15 H -0.245 1.245 16 S 0.058 5.942 17 H 0.101 0.899 18 H 0.092 0.908 19 H 0.085 0.915 20 H 0.169 0.831 21 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -5.619 0.056 6.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.314 3.686 3 O -0.438 6.438 4 C -0.576 4.576 5 N -0.096 5.096 6 C -0.314 4.314 7 C -0.158 4.158 8 C -0.348 4.348 9 H 0.157 0.843 10 C -0.226 4.226 11 N -0.378 5.378 12 Si 0.843 3.157 13 H -0.168 1.168 14 H -0.187 1.187 15 H -0.168 1.168 16 S 0.310 5.690 17 H 0.120 0.880 18 H 0.110 0.890 19 H 0.104 0.896 20 H 0.186 0.814 21 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.787 -3.837 0.045 4.742 hybrid contribution 0.132 -1.018 0.015 1.027 sum 2.919 -4.855 0.060 5.665 Atomic orbital electron populations 1.21872 0.90895 1.04434 1.04862 1.21489 0.92548 0.84826 0.69753 1.90420 1.73480 1.34473 1.45465 1.26621 0.96232 0.95661 1.39126 1.65295 1.40482 0.98232 1.05627 1.22081 0.87874 0.97869 1.23560 1.24066 0.97962 0.95886 0.97916 1.20354 0.89541 0.96884 1.28009 0.84254 1.27871 1.04236 0.98812 0.91670 1.68979 1.26758 1.17719 1.24379 0.84512 0.73157 0.76616 0.81406 1.16825 1.18724 1.16833 1.85145 1.04178 1.02908 1.76763 0.88025 0.88974 0.89593 0.81369 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.94 10.12 71.23 0.72 -5.22 14 2 C 0.43 21.17 7.22 27.76 0.20 21.37 14 3 O -0.55 -30.16 17.66 -3.43 -0.06 -30.22 14 4 C -0.33 -17.69 7.35 86.85 0.64 -17.05 14 5 N -0.38 -19.80 10.02 -187.69 -1.88 -21.68 14 6 C -0.14 -7.15 11.36 85.37 0.97 -6.18 14 7 C -0.03 -1.70 6.26 22.88 0.14 -1.55 14 8 C -0.31 -13.53 9.33 23.17 0.22 -13.31 14 9 H 0.14 5.14 7.86 -2.91 -0.02 5.12 14 10 C 0.00 -0.02 5.51 85.49 0.47 0.45 14 11 N -0.75 -33.45 10.73 21.96 0.24 -33.22 14 12 Si 1.03 28.27 29.57 68.60 2.03 30.30 14 13 H -0.24 -6.38 7.11 99.48 0.71 -5.68 14 14 H -0.26 -7.00 7.11 99.48 0.71 -6.29 14 15 H -0.24 -6.39 7.11 99.48 0.71 -5.68 14 16 S 0.06 3.17 20.25 -56.49 -1.14 2.03 14 17 H 0.10 3.30 8.14 -2.39 -0.02 3.29 14 18 H 0.09 2.92 8.14 -2.39 -0.02 2.91 14 19 H 0.09 3.09 7.85 -2.38 -0.02 3.07 14 20 H 0.17 7.18 8.06 -2.91 -0.02 7.16 14 21 H 0.32 12.40 8.29 -92.71 -0.77 11.63 14 Total: -1.00 -62.55 215.03 3.79 -58.76 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.25 Total: 15.52 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 3.36 Total: -21.49 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -1.65 Total: -54.90 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.06 Total: -30.22 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: 2.03 Total: 30.30 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.14 Total: 2.03 kcal Total: -62.55 3.79 -58.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238158283.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.241 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds