Wall clock time and date at job start Mon Mar 30 2020 02:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35688 * 117.00092 * 2 1 4 4 C 1.38980 * 120.72327 * 270.02393 * 3 2 1 5 5 F 1.35100 * 119.66284 * 359.97438 * 4 3 2 6 6 N 1.31951 * 120.68710 * 179.97438 * 4 3 2 7 7 C 1.32217 * 122.37667 * 359.97438 * 6 4 3 8 8 C 1.36426 * 121.38331 * 359.71441 * 7 6 4 9 9 C 1.41172 * 119.11209 * 0.56557 * 8 7 6 10 10 C 1.41218 * 121.05486 * 179.72690 * 9 8 7 11 11 H 1.07998 * 120.00286 * 151.18733 * 10 9 8 12 12 C 1.40046 * 120.00004 * 330.90336 * 10 9 8 13 13 N 1.30770 * 120.00391 * 161.43140 * 12 10 9 14 14 Si 1.86803 * 119.99954 * 341.43354 * 12 10 9 15 15 H 1.48497 * 109.47275 * 95.34689 * 14 12 10 16 16 H 1.48506 * 109.47190 * 215.34971 * 14 12 10 17 17 H 1.48507 * 109.47176 * 335.34677 * 14 12 10 18 18 H 1.08999 * 109.46995 * 300.00063 * 1 2 3 19 19 H 1.09001 * 109.47250 * 59.99855 * 1 2 3 20 20 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 21 21 H 1.07997 * 119.30333 * 180.02562 * 7 6 4 22 22 H 1.07999 * 120.44239 * 180.30457 * 8 7 6 23 23 H 0.96993 * 120.00295 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 2.3669 1.8418 -1.1947 5 9 2.0639 1.2470 -2.3693 6 7 2.9655 3.0178 -1.1939 7 6 3.2861 3.6482 -0.0768 8 6 3.0067 3.1128 1.1465 9 6 2.3724 1.8535 1.2164 10 6 2.0693 1.2586 2.4607 11 1 1.2269 0.5884 2.5480 12 6 2.8646 1.5330 3.5803 13 7 2.4058 1.2972 4.7820 14 14 4.5810 2.2358 3.3571 15 1 4.5304 3.7146 3.4816 16 1 5.4821 1.6818 4.3995 17 1 5.0950 1.8694 2.0129 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 3.7750 4.6095 -0.1340 22 1 3.2710 3.6432 2.0493 23 1 2.9565 1.4876 5.5574 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238413803.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:05 Heat of formation + Delta-G solvation = -76.088124 kcal Electronic energy + Delta-G solvation = -12334.711995 eV Core-core repulsion = 9868.936677 eV Total energy + Delta-G solvation = -2465.775318 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.82364 -40.77207 -38.52852 -36.06186 -33.26579 -31.02328 -28.54401 -27.28551 -24.06148 -23.32291 -20.05586 -18.69934 -18.33814 -17.73194 -17.11692 -16.85298 -15.94031 -15.58217 -15.44049 -14.84134 -14.43355 -14.00264 -13.61354 -13.41426 -12.92551 -12.76040 -12.49095 -11.83533 -11.38203 -11.22046 -10.31834 -10.03880 -9.57140 -9.12503 -6.85100 0.22321 0.47267 1.25550 1.40243 1.47912 2.05250 2.41459 2.80222 2.94281 3.35821 4.00368 4.27864 4.40174 4.50073 4.53546 4.68814 4.90307 4.97016 5.03684 5.42795 5.80549 5.98708 6.18602 6.46481 6.79582 7.10817 7.92227 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.039209 B = 0.016269 C = 0.012359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.943067 B = 1720.614508 C = 2264.970921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.332 6.332 3 C -0.101 4.101 4 C 0.293 3.707 5 F -0.131 7.131 6 N -0.605 5.605 7 C 0.147 3.853 8 C -0.290 4.290 9 C 0.089 3.911 10 C -0.432 4.432 11 H 0.071 0.929 12 C 0.055 3.945 13 N -0.806 5.806 14 Si 0.964 3.036 15 H -0.234 1.234 16 H -0.269 1.269 17 H -0.260 1.260 18 H 0.033 0.967 19 H 0.041 0.959 20 H 0.113 0.887 21 H 0.186 0.814 22 H 0.134 0.866 23 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 2.634 -1.921 3.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.248 6.248 3 C -0.151 4.151 4 C 0.142 3.858 5 F -0.110 7.110 6 N -0.328 5.328 7 C -0.003 4.003 8 C -0.312 4.312 9 C 0.081 3.919 10 C -0.461 4.461 11 H 0.089 0.911 12 C -0.167 4.167 13 N -0.429 5.429 14 Si 0.785 3.215 15 H -0.158 1.158 16 H -0.195 1.195 17 H -0.184 1.184 18 H 0.052 0.948 19 H 0.060 0.940 20 H 0.131 0.869 21 H 0.203 0.797 22 H 0.151 0.849 23 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.578 2.764 -2.446 4.014 hybrid contribution -0.242 -0.430 0.712 0.866 sum 1.337 2.334 -1.734 3.200 Atomic orbital electron populations 1.23105 0.79954 1.03798 0.99691 1.85949 1.20180 1.24652 1.93997 1.19568 1.13048 0.91297 0.91219 1.18634 0.97587 0.89789 0.79772 1.91465 1.90685 1.82079 1.46781 1.66877 1.22831 1.09214 1.33857 1.22074 0.93776 0.98643 0.85772 1.21844 1.12430 0.97436 0.99531 1.18255 0.90113 0.91261 0.92246 1.19411 1.12135 1.23085 0.91422 0.91120 1.26972 1.04118 0.92192 0.93372 1.69624 1.39454 1.33484 1.00348 0.85504 0.76030 0.80470 0.79457 1.15845 1.19536 1.18443 0.94824 0.94027 0.86916 0.79683 0.84878 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 11.08 113.37 1.26 2.36 14 2 O -0.33 -15.87 9.77 -90.07 -0.88 -16.75 14 3 C -0.10 -5.01 5.81 23.25 0.14 -4.88 14 4 C 0.29 14.01 8.43 84.85 0.72 14.73 14 5 F -0.13 -5.96 17.15 44.97 0.77 -5.19 14 6 N -0.60 -27.35 10.34 -197.75 -2.04 -29.39 14 7 C 0.15 5.88 11.09 84.21 0.93 6.82 14 8 C -0.29 -12.64 7.24 22.57 0.16 -12.47 14 9 C 0.09 4.44 5.14 -21.02 -0.11 4.34 14 10 C -0.43 -22.53 9.28 23.44 0.22 -22.31 14 11 H 0.07 3.98 7.52 -2.91 -0.02 3.96 14 12 C 0.05 2.64 5.42 85.29 0.46 3.10 14 13 N -0.81 -39.19 13.92 21.84 0.30 -38.89 14 14 Si 0.96 37.68 24.54 68.60 1.68 39.37 14 15 H -0.23 -8.07 6.70 99.48 0.67 -7.41 14 16 H -0.27 -9.85 7.11 99.48 0.71 -9.14 14 17 H -0.26 -10.93 6.86 99.48 0.68 -10.25 14 18 H 0.03 1.32 7.76 -2.39 -0.02 1.30 14 19 H 0.04 1.47 8.14 -2.39 -0.02 1.45 14 20 H 0.11 3.47 8.14 -2.39 -0.02 3.45 14 21 H 0.19 5.58 8.06 -2.91 -0.02 5.56 14 22 H 0.13 5.31 4.77 -2.91 -0.01 5.30 14 23 H 0.31 13.05 8.29 -92.71 -0.77 12.28 14 Total: -1.00 -57.45 212.57 4.78 -52.67 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.17 Total: 6.50 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 3.78 Total: -8.32 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -1.74 Total: -68.28 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.88 Total: -16.75 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.77 Total: -5.19 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.68 Total: 39.37 kcal Total: -57.45 4.78 -52.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238413803.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.420 kcal (2) G-P(sol) polarization free energy of solvation -57.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds