Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38835 * 119.47333 * 2 1 4 4 C 1.38845 * 119.57924 * 179.73184 * 3 2 1 5 5 C 1.38378 * 118.57919 * 0.53305 * 4 3 2 6 6 Cl 1.73597 * 120.52719 * 179.71076 * 5 4 3 7 7 C 1.40782 * 118.94073 * 359.73380 * 5 4 3 8 8 C 1.41318 * 119.83874 * 179.97438 * 7 5 4 9 9 H 1.08000 * 119.99869 * 0.02562 * 8 7 5 10 10 C 1.40039 * 120.00043 * 180.02562 * 8 7 5 11 11 N 1.30744 * 119.99734 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00312 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46981 * 90.00147 * 12 10 8 14 14 H 1.48495 * 109.47499 * 210.00683 * 12 10 8 15 15 H 1.48504 * 109.46947 * 330.00742 * 12 10 8 16 16 N 1.31385 * 119.47233 * 180.27340 * 2 1 3 17 17 H 1.09001 * 109.46953 * 269.72535 * 1 2 3 18 18 H 1.09000 * 109.47318 * 29.72133 * 1 2 3 19 19 H 1.09000 * 109.47161 * 149.72764 * 1 2 3 20 20 H 1.08002 * 120.20805 * 0.02562 * 3 2 1 21 21 H 1.07998 * 120.71326 * 180.26654 * 4 3 2 22 22 H 0.97001 * 119.99908 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.2087 0.0000 4 6 3.5786 1.2113 0.0057 5 6 4.2428 -0.0027 -0.0002 6 17 5.9779 -0.0584 -0.0011 7 6 3.4891 -1.1917 -0.0058 8 6 4.1479 -2.4419 -0.0123 9 1 5.2271 -2.4835 -0.0126 10 6 3.4014 -3.6267 -0.0185 11 7 2.0950 -3.5762 -0.0188 12 14 4.2722 -5.2793 -0.0279 13 1 4.5035 -5.7248 1.3698 14 1 3.4302 -6.2786 -0.7332 15 1 5.5755 -5.1480 -0.7276 16 7 2.1535 -1.1438 -0.0055 17 1 -0.3633 -0.0049 1.0277 18 1 -0.3634 0.8925 -0.5095 19 1 -0.3633 -0.8875 -0.5181 20 1 1.6450 2.1410 0.0004 21 1 4.1285 2.1408 0.0101 22 1 1.5779 -4.3969 -0.0234 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238479588.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -4.687674 kcal Electronic energy + Delta-G solvation = -10166.687304 eV Core-core repulsion = 8132.344517 eV Total energy + Delta-G solvation = -2034.342787 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.17775 -36.97153 -35.70114 -33.07517 -32.36239 -28.99245 -26.93614 -23.48247 -22.23226 -19.39976 -17.39048 -16.70405 -16.41331 -15.60961 -14.96424 -14.39917 -13.76922 -13.54929 -13.25369 -12.92515 -12.82144 -12.64438 -12.50235 -12.12155 -11.96337 -11.30793 -11.21288 -10.08519 -9.58491 -9.30314 -8.36545 -6.56627 0.73350 1.01119 1.39893 1.51099 1.54601 1.80637 2.21100 2.77472 3.76429 4.10940 4.24479 4.60837 4.72245 4.93977 4.98675 5.02929 5.24729 5.40207 5.53029 5.65239 6.06987 6.25578 6.60928 6.85550 8.08560 8.37587 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.030104 B = 0.017234 C = 0.011025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.875003 B = 1624.288003 C = 2539.017340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.127 3.873 3 C -0.306 4.306 4 C -0.045 4.045 5 C -0.217 4.217 6 Cl -0.099 7.099 7 C 0.230 3.770 8 C -0.449 4.449 9 H 0.094 0.906 10 C 0.025 3.975 11 N -0.744 5.744 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.264 1.264 15 H -0.257 1.257 16 N -0.506 5.506 17 H 0.074 0.926 18 H 0.089 0.911 19 H 0.056 0.944 20 H 0.138 0.862 21 H 0.134 0.866 22 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 2.325 0.016 2.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C -0.329 4.329 4 C -0.070 4.070 5 C -0.248 4.248 6 Cl -0.071 7.071 7 C 0.105 3.895 8 C -0.480 4.480 9 H 0.112 0.888 10 C -0.198 4.198 11 N -0.365 5.365 12 Si 0.804 3.196 13 H -0.186 1.186 14 H -0.188 1.188 15 H -0.181 1.181 16 N -0.221 5.221 17 H 0.093 0.907 18 H 0.108 0.892 19 H 0.075 0.925 20 H 0.155 0.845 21 H 0.152 0.848 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.399 1.390 0.005 1.446 hybrid contribution 0.992 0.221 0.028 1.017 sum 0.593 1.611 0.032 1.717 Atomic orbital electron populations 1.20563 0.88413 1.02631 1.02524 1.22047 0.98130 0.89422 0.92321 1.21503 0.93468 0.98668 1.19253 1.21153 0.94689 0.95738 0.95449 1.21894 0.83135 0.96184 1.23551 1.98178 1.12292 1.98815 1.97809 1.18851 0.88327 0.92371 0.89926 1.20101 0.95362 0.90060 1.42428 0.88781 1.27001 0.95461 1.04809 0.92556 1.70207 1.07463 1.30732 1.28128 0.85178 0.79183 0.75645 0.79624 1.18580 1.18823 1.18093 1.68746 1.07572 1.26469 1.19335 0.90692 0.89231 0.92475 0.84469 0.84771 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.06 10.16 71.24 0.72 -2.34 14 2 C 0.13 5.97 6.79 42.77 0.29 6.26 14 3 C -0.31 -13.01 9.75 22.56 0.22 -12.79 14 4 C -0.05 -2.00 9.97 22.45 0.22 -1.78 14 5 C -0.22 -10.78 6.40 22.93 0.15 -10.64 14 6 Cl -0.10 -4.31 27.42 -2.72 -0.07 -4.39 14 7 C 0.23 12.82 6.56 40.25 0.26 13.08 14 8 C -0.45 -24.52 8.83 23.46 0.21 -24.32 14 9 H 0.09 4.92 6.65 -2.91 -0.02 4.90 14 10 C 0.02 1.26 5.50 85.29 0.47 1.73 14 11 N -0.74 -39.47 11.46 21.84 0.25 -39.22 14 12 Si 0.98 38.14 29.56 68.60 2.03 40.16 14 13 H -0.26 -9.77 7.11 99.48 0.71 -9.07 14 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 14 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 14 16 N -0.51 -27.96 7.77 -177.12 -1.38 -29.33 14 17 H 0.07 2.51 8.14 -2.39 -0.02 2.49 14 18 H 0.09 2.61 8.07 -2.39 -0.02 2.59 14 19 H 0.06 2.20 8.14 -2.39 -0.02 2.18 14 20 H 0.14 4.74 8.06 -2.91 -0.02 4.72 14 21 H 0.13 4.98 8.06 -2.91 -0.02 4.96 14 22 H 0.28 13.42 8.29 -92.71 -0.77 12.65 14 Total: -1.00 -60.74 216.90 4.60 -56.14 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.23 Total: 7.42 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 2.54 Total: -30.79 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.13 Total: -68.55 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 17 Polarization: -4.31 SS G_CDS: -0.07 Total: -4.39 kcal Total: -60.74 4.60 -56.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238479588.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.457 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds