Wall clock time and date at job start Mon Mar 30 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31396 * 119.51084 * 2 1 4 4 C 1.33617 * 121.52872 * 180.02562 * 3 2 1 5 5 C 1.41341 * 119.81231 * 180.02562 * 4 3 2 6 6 H 1.08001 * 120.00398 * 180.02562 * 5 4 3 7 7 C 1.40031 * 119.99892 * 359.97438 * 5 4 3 8 8 N 1.30750 * 119.99869 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00056 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46942 * 120.00629 * 9 7 5 12 12 H 1.48501 * 109.47036 * 240.00198 * 9 7 5 13 13 C 1.40697 * 120.37948 * 359.97438 * 4 3 2 14 14 C 1.38069 * 119.00030 * 0.04593 * 13 4 3 15 15 C 1.38935 * 119.50359 * 180.02562 * 2 1 3 16 16 Cl 1.73601 * 120.24144 * 359.69719 * 15 2 1 17 17 H 1.09002 * 109.46613 * 269.97793 * 1 2 3 18 18 H 1.08999 * 109.46947 * 29.97348 * 1 2 3 19 19 H 1.08998 * 109.47258 * 149.97834 * 1 2 3 20 20 H 0.97006 * 120.00107 * 179.97438 * 8 7 5 21 21 H 1.07996 * 120.49645 * 180.02562 * 13 4 3 22 22 H 1.08004 * 120.70584 * 180.02562 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1542 1.1435 0.0000 4 6 3.4896 1.1905 -0.0005 5 6 4.1487 2.4409 0.0001 6 1 5.2279 2.4825 -0.0008 7 6 3.4023 3.6257 0.0006 8 7 2.0958 3.5753 0.0011 9 14 4.2733 5.2782 0.0021 10 1 5.7426 5.0634 0.0018 11 1 3.8851 6.0435 -1.2100 12 1 3.8844 6.0417 1.2150 13 6 4.2434 0.0026 -0.0005 14 6 3.5825 -1.2096 -0.0010 15 6 2.1912 -1.2092 -0.0005 16 17 1.3166 -2.7087 0.0067 17 1 -0.3632 -0.0004 1.0277 18 1 -0.3633 0.8902 -0.5134 19 1 -0.3634 -0.8898 -0.5142 20 1 1.5788 4.3961 0.0019 21 1 5.3228 0.0384 -0.0005 22 1 4.1337 -2.1384 -0.0006 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238519067.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:27 Heat of formation + Delta-G solvation = -4.857035 kcal Electronic energy + Delta-G solvation = -10111.040963 eV Core-core repulsion = 8076.690832 eV Total energy + Delta-G solvation = -2034.350131 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.22495 -37.08754 -35.57131 -33.49846 -32.08969 -29.08656 -26.97939 -23.42393 -22.34982 -19.44730 -17.29219 -16.88171 -16.48257 -15.60935 -15.12368 -14.35224 -13.86987 -13.33596 -13.26473 -12.96994 -12.78595 -12.75194 -12.44849 -12.41102 -11.87993 -11.49989 -11.12446 -10.12686 -9.61416 -9.38137 -8.37910 -6.58777 0.69517 1.00135 1.41679 1.50236 1.57379 1.70469 2.20756 2.73653 3.75790 3.98484 4.19715 4.56989 4.74364 4.87969 4.94911 5.00081 5.19690 5.45399 5.46144 5.57034 5.97345 6.17068 6.62334 6.83639 8.05353 8.36961 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.072404 B = 0.010487 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.625880 B = 2669.299589 C = 3040.777703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.145 3.855 3 N -0.506 5.506 4 C 0.218 3.782 5 C -0.452 4.452 6 H 0.096 0.904 7 C 0.021 3.979 8 N -0.747 5.747 9 Si 0.991 3.009 10 H -0.252 1.252 11 H -0.266 1.266 12 H -0.266 1.266 13 C -0.284 4.284 14 C -0.046 4.046 15 C -0.230 4.230 16 Cl -0.094 7.094 17 H 0.074 0.926 18 H 0.062 0.938 19 H 0.081 0.919 20 H 0.282 0.718 21 H 0.122 0.878 22 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -2.382 0.016 2.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 N -0.220 5.220 4 C 0.094 3.906 5 C -0.482 4.482 6 H 0.114 0.886 7 C -0.201 4.201 8 N -0.368 5.368 9 Si 0.811 3.189 10 H -0.175 1.175 11 H -0.191 1.191 12 H -0.191 1.191 13 C -0.306 4.306 14 C -0.070 4.070 15 C -0.262 4.262 16 Cl -0.066 7.066 17 H 0.093 0.907 18 H 0.081 0.919 19 H 0.100 0.900 20 H 0.093 0.907 21 H 0.140 0.860 22 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.720 -1.589 0.017 1.744 hybrid contribution 0.697 -0.375 0.016 0.792 sum -0.023 -1.964 0.033 1.964 Atomic orbital electron populations 1.20591 0.88864 1.02540 1.02547 1.21748 0.97878 0.87683 0.92851 1.68737 1.09302 1.24377 1.19610 1.19148 0.88552 0.93865 0.89084 1.20119 0.95233 0.90045 1.42808 0.88597 1.27078 0.95474 1.05101 0.92483 1.70215 1.07682 1.30819 1.28101 0.85018 0.79579 0.75460 0.78836 1.17502 1.19076 1.19075 1.21918 0.99948 0.92505 1.16234 1.21084 0.92182 0.98091 0.95632 1.21377 0.92773 0.86102 1.25926 1.98199 1.76862 1.33522 1.98020 0.90729 0.91917 0.89994 0.90673 0.85986 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.53 9.77 71.24 0.70 -2.83 14 2 C 0.15 7.08 6.79 42.79 0.29 7.37 14 3 N -0.51 -28.01 7.77 -177.11 -1.38 -29.39 14 4 C 0.22 11.92 6.55 40.24 0.26 12.19 14 5 C -0.45 -23.80 9.14 23.47 0.21 -23.59 14 6 H 0.10 4.66 7.85 -2.91 -0.02 4.64 14 7 C 0.02 1.06 5.50 85.29 0.47 1.53 14 8 N -0.75 -39.28 11.46 21.84 0.25 -39.03 14 9 Si 0.99 36.69 29.56 68.60 2.03 38.72 14 10 H -0.25 -8.90 7.11 99.48 0.71 -8.19 14 11 H -0.27 -9.51 7.11 99.48 0.71 -8.80 14 12 H -0.27 -9.51 7.11 99.48 0.71 -8.80 14 13 C -0.28 -13.68 9.84 22.83 0.22 -13.45 14 14 C -0.05 -2.01 9.96 22.44 0.22 -1.79 14 15 C -0.23 -10.30 6.36 22.65 0.14 -10.16 14 16 Cl -0.09 -3.43 27.31 -2.72 -0.07 -3.50 14 17 H 0.07 2.78 8.14 -2.39 -0.02 2.76 14 18 H 0.06 2.56 8.14 -2.39 -0.02 2.54 14 19 H 0.08 2.88 6.89 -2.39 -0.02 2.87 14 20 H 0.28 13.30 8.29 -92.70 -0.77 12.53 14 21 H 0.12 5.30 8.06 -2.91 -0.02 5.28 14 22 H 0.14 5.02 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -58.69 216.75 4.58 -54.11 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.23 Total: 9.82 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 2.53 Total: -30.74 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -1.13 Total: -68.42 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.50 kcal Total: -58.69 4.58 -54.11 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238519067.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.252 kcal (2) G-P(sol) polarization free energy of solvation -58.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds