Wall clock time and date at job start Mon Mar 30 2020 02:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48503 * 109.46891 * 269.99713 * 3 2 1 5 5 H 1.48493 * 109.47365 * 29.99587 * 3 2 1 6 6 H 1.48501 * 109.47049 * 150.00244 * 3 2 1 7 7 C 1.37876 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00542 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99917 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.85039 * 303.41770 * 9 7 2 11 11 C 1.53450 * 110.79180 * 66.84337 * 9 7 2 12 12 O 1.20830 * 125.82483 * 293.91147 * 11 9 7 13 13 O 1.37453 * 108.34705 * 113.91301 * 11 9 7 14 14 C 1.41930 * 104.63663 * 331.38225 * 13 11 9 15 15 H 1.09000 * 109.02445 * 295.07131 * 14 13 11 16 16 C 1.50266 * 128.21430 * 160.66038 * 14 13 11 17 17 C 1.55968 * 102.87943 * 214.51883 * 16 14 13 18 18 N 1.50134 * 106.16958 * 5.73170 * 17 16 14 19 19 C 1.44852 * 103.04159 * 27.49044 * 18 17 16 20 20 H 1.09002 * 111.21350 * 69.18907 * 19 18 17 21 21 H 0.96995 * 120.00100 * 0.02562 * 1 2 3 22 22 H 1.08999 * 110.72930 * 332.87091 * 16 14 13 23 23 H 1.09004 * 110.72865 * 96.17488 * 16 14 13 24 24 H 1.08998 * 110.11446 * 124.91683 * 17 16 14 25 25 H 1.09006 * 110.11270 * 246.55696 * 17 16 14 26 26 H 1.00897 * 111.00548 * 268.60461 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5709 -2.5544 0.8505 11 6 0.4907 -2.6891 -1.3187 12 8 -0.4354 -2.0157 -1.7045 13 8 1.0428 -3.7561 -1.9866 14 6 2.3976 -3.7814 -1.5642 15 1 2.8955 -2.8768 -1.9131 16 6 3.3728 -4.9224 -1.6371 17 6 4.2315 -4.7285 -0.3496 18 7 3.5954 -3.6013 0.4114 19 6 2.2080 -3.6719 0.0012 20 1 1.7239 -4.5638 0.3992 21 1 -0.4850 0.8400 -0.0004 22 1 2.8503 -5.8786 -1.6121 23 1 3.9929 -4.8434 -2.5300 24 1 4.2197 -5.6390 0.2495 25 1 5.2556 -4.4688 -0.6177 26 1 4.0040 -2.7154 0.1542 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238594576.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:01 Heat of formation + Delta-G solvation = -49.057028 kcal Electronic energy + Delta-G solvation = -13020.213827 eV Core-core repulsion = 10679.070970 eV Total energy + Delta-G solvation = -2341.142857 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.66791 -37.25487 -35.44629 -33.22515 -30.61462 -28.76881 -25.86617 -24.28483 -20.77856 -20.58489 -19.70404 -17.37471 -16.09205 -15.38300 -15.17238 -14.80697 -14.25668 -13.80463 -13.33170 -12.94080 -12.28079 -12.04284 -11.73359 -11.34388 -10.98896 -10.91516 -10.74113 -10.45288 -9.85520 -9.54064 -9.36214 -8.91208 -8.50873 -8.00314 -6.17079 -4.30491 3.20994 3.26138 3.31028 3.34847 3.97359 4.29987 4.51214 5.03707 5.14195 5.18121 5.36003 5.65765 5.71059 5.90816 5.93486 5.98093 6.26050 6.34392 6.43203 7.09953 7.24164 7.59811 7.66546 7.90358 8.01924 8.66594 8.91250 9.35291 10.87776 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.015282 C = 0.012245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.783248 B = 1831.825991 C = 2286.182432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.073 0.927 11 C 0.472 3.528 12 O -0.424 6.424 13 O -0.368 6.368 14 C 0.019 3.981 15 H 0.073 0.927 16 C -0.132 4.132 17 C 0.042 3.958 18 N -0.643 5.643 19 C 0.044 3.956 20 H 0.087 0.913 21 H 0.267 0.733 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.403 -6.684 -0.820 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.088 0.912 9 C -0.001 4.001 10 H 0.091 0.909 11 C 0.311 3.689 12 O -0.300 6.300 13 O -0.288 6.288 14 C -0.041 4.041 15 H 0.091 0.909 16 C -0.171 4.171 17 C -0.088 4.088 18 N -0.273 5.273 19 C -0.068 4.068 20 H 0.105 0.895 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.588 -6.654 -0.461 9.375 hybrid contribution 0.390 1.284 -1.113 1.744 sum 6.977 -5.370 -1.574 8.944 Atomic orbital electron populations 1.70053 1.05842 1.27351 1.44414 1.25125 0.94972 0.99758 0.94101 0.86484 0.79919 0.82846 0.78227 1.20579 1.20861 1.19421 1.20520 0.92678 0.88367 1.55811 0.91241 1.19573 0.93864 0.94150 0.92534 0.90915 1.26239 0.81232 0.74654 0.86760 1.90587 1.26732 1.40108 1.72598 1.87154 1.22842 1.50190 1.68645 1.23687 0.83071 0.99352 0.97977 0.90874 1.22136 0.96816 0.98470 0.99642 1.23649 0.97344 0.96456 0.91303 1.62589 1.02536 1.07486 1.54663 1.23183 0.91353 1.00225 0.92013 0.89520 0.92323 0.90539 0.90781 0.90171 0.91212 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.54 11.53 55.43 0.64 -23.90 15 2 C 0.07 1.87 5.36 -17.82 -0.10 1.78 15 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 7 C -0.54 -13.89 7.91 -34.44 -0.27 -14.17 15 8 H 0.07 1.68 5.87 -52.49 -0.31 1.38 15 9 C 0.02 0.47 2.80 -92.36 -0.26 0.21 15 10 H 0.07 1.91 8.14 -51.93 -0.42 1.49 15 11 C 0.47 12.32 7.72 37.39 0.29 12.61 15 12 O -0.42 -12.49 16.31 -18.14 -0.30 -12.79 15 13 O -0.37 -8.48 11.23 -48.65 -0.55 -9.03 15 14 C 0.02 0.36 3.66 -25.31 -0.09 0.26 15 15 H 0.07 1.50 7.56 -51.93 -0.39 1.10 15 16 C -0.13 -1.87 6.83 -26.51 -0.18 -2.06 15 17 C 0.04 0.56 7.60 -0.42 0.00 0.56 15 18 N -0.64 -11.20 7.46 -101.85 -0.76 -11.96 15 19 C 0.04 0.88 3.56 -66.86 -0.24 0.64 15 20 H 0.09 1.65 8.14 -51.93 -0.42 1.23 15 21 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.35 6.23 6.66 -39.29 -0.26 5.97 15 LS Contribution 220.09 15.07 3.32 3.32 Total: -1.00 -30.24 220.09 -6.15 -36.39 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.63 Total: 2.47 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.85 Total: -0.16 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.12 Total: -35.86 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.84 Total: -21.82 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.24 -6.15 -36.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238594576.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.668 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds