Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47435 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47432 * 300.00004 * 3 2 1 6 6 H 1.48501 * 109.47384 * 59.99635 * 3 2 1 7 7 C 1.40140 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.46143 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.21706 * 120.00076 * 0.02562 * 9 7 2 11 11 N 1.34779 * 119.99908 * 180.02562 * 9 7 2 12 12 N 1.40103 * 126.02341 * 359.97438 * 11 9 7 13 13 H 0.96998 * 125.99982 * 0.02562 * 12 11 9 14 14 C 1.34773 * 107.99679 * 180.02562 * 12 11 9 15 15 O 1.21883 * 125.97268 * 180.25789 * 14 12 11 16 16 C 1.40535 * 108.04426 * 0.02562 * 14 12 11 17 17 C 1.36464 * 108.02874 * 359.97438 * 16 14 12 18 18 N 1.37123 * 126.01531 * 179.97438 * 17 16 14 19 19 H 0.97004 * 119.99769 * 0.02562 * 1 2 3 20 20 H 1.08001 * 125.98256 * 180.02562 * 16 14 12 21 21 H 0.97006 * 119.99812 * 0.02562 * 18 17 16 22 22 H 0.96994 * 120.00470 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7002 1.3464 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8815 2.3965 1.2124 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2137 -0.0001 9 6 1.2763 -2.4793 -0.0005 10 8 0.0592 -2.4793 -0.0005 11 7 1.9502 -3.6465 -0.0005 12 7 3.3435 -3.7935 -0.0010 13 1 3.9928 -3.0729 -0.0011 14 6 3.6231 -5.1119 -0.0014 15 8 4.7366 -5.6076 0.0025 16 6 2.4063 -5.8150 -0.0018 17 6 1.3914 -4.9027 -0.0010 18 7 0.0503 -5.1886 -0.0015 19 1 -0.4850 0.8401 -0.0004 20 1 2.2941 -6.8891 -0.0017 21 1 -0.2489 -6.1113 -0.0022 22 1 -0.5992 -4.4682 -0.0013 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595392.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = -28.684314 kcal Electronic energy + Delta-G solvation = -12262.235284 eV Core-core repulsion = 9818.435511 eV Total energy + Delta-G solvation = -2443.799773 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.72223 -39.40384 -37.70426 -35.91443 -34.94943 -31.88636 -30.72173 -28.72506 -24.01477 -22.46355 -21.79724 -19.90990 -18.52564 -17.59526 -17.27855 -17.04461 -16.73229 -16.19199 -15.24703 -14.96168 -14.84571 -14.29274 -13.41317 -13.38534 -12.97782 -12.85028 -12.08087 -11.96612 -11.13931 -11.07441 -10.42963 -9.51873 -8.82425 -8.64553 -7.25094 0.62486 0.83834 1.37108 1.39988 1.56988 2.14202 2.17268 2.42829 2.75570 3.18962 3.22154 4.33109 4.53474 4.98592 5.08941 5.28788 5.57562 5.87816 5.96734 6.30319 6.52452 6.70400 6.99803 7.45920 7.71731 8.28075 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.047278 B = 0.012139 C = 0.009692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.105037 B = 2305.986916 C = 2888.250550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.037 3.963 3 Si 1.003 2.997 4 H -0.248 1.248 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.097 0.903 9 C 0.530 3.470 10 O -0.567 6.567 11 N -0.361 5.361 12 N -0.507 5.507 13 H 0.440 0.560 14 C 0.540 3.460 15 O -0.614 6.614 16 C -0.451 4.451 17 C 0.457 3.543 18 N -0.810 5.810 19 H 0.289 0.711 20 H 0.175 0.825 21 H 0.432 0.568 22 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -1.154 -0.013 1.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.822 3.178 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.115 0.885 9 C 0.344 3.656 10 O -0.447 6.447 11 N -0.177 5.177 12 N -0.263 5.263 13 H 0.287 0.713 14 C 0.341 3.659 15 O -0.500 6.500 16 C -0.485 4.485 17 C 0.235 3.765 18 N -0.358 5.358 19 H 0.100 0.900 20 H 0.192 0.808 21 H 0.267 0.733 22 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.559 -1.066 -0.010 1.204 hybrid contribution 0.015 0.835 -0.001 0.835 sum -0.544 -0.231 -0.011 0.591 Atomic orbital electron populations 1.70003 1.09304 1.30629 1.31705 1.26957 0.95733 1.04748 0.90858 0.84845 0.79333 0.74631 0.79026 1.17091 1.18861 1.18874 1.21440 0.95356 0.88626 1.52030 0.88500 1.18950 0.86855 0.81445 0.78342 1.90568 1.13487 1.83560 1.57109 1.46205 0.96291 1.05826 1.69342 1.45794 0.94189 1.09987 1.76334 0.71255 1.16767 0.90339 0.80663 0.78090 1.90790 1.27427 1.71517 1.60281 1.21178 0.89230 1.00107 1.37975 1.18018 0.86925 0.84086 0.87451 1.41827 1.00995 1.13308 1.79673 0.90050 0.80765 0.73309 0.75137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.83 11.82 21.85 0.26 -40.57 14 2 C 0.04 1.77 5.50 85.33 0.47 2.24 14 3 Si 1.00 35.23 29.56 68.60 2.03 37.26 14 4 H -0.25 -8.21 7.11 99.48 0.71 -7.51 14 5 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.54 -26.69 9.24 24.79 0.23 -26.46 14 8 H 0.10 4.29 6.76 -2.91 -0.02 4.27 14 9 C 0.53 27.05 7.79 86.29 0.67 27.72 14 10 O -0.57 -31.07 13.24 -4.37 -0.06 -31.13 14 11 N -0.36 -16.06 3.68 -312.53 -1.15 -17.21 14 12 N -0.51 -21.07 6.84 -180.70 -1.24 -22.31 14 13 H 0.44 16.53 7.83 -213.32 -1.67 14.86 14 14 C 0.54 23.43 8.28 84.80 0.70 24.13 14 15 O -0.61 -29.72 18.07 -4.94 -0.09 -29.81 14 16 C -0.45 -17.14 10.86 22.42 0.24 -16.89 14 17 C 0.46 17.75 7.85 131.47 1.03 18.78 14 18 N -0.81 -25.41 8.94 -55.30 -0.49 -25.91 14 19 H 0.29 13.33 8.29 -92.71 -0.77 12.56 14 20 H 0.17 5.60 8.06 -2.91 -0.02 5.57 14 21 H 0.43 9.48 8.94 -92.70 -0.83 8.65 14 22 H 0.41 14.64 6.61 -92.71 -0.61 14.03 14 Total: -1.00 -65.02 209.48 0.80 -64.22 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -1.80 Total: 35.93 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 3.35 Total: 29.52 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -2.62 Total: -105.99 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -0.15 Total: -60.94 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -65.02 0.80 -64.22 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595392.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.535 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds