Wall clock time and date at job start Mon Mar 30 2020 02:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47218 * 299.99697 * 3 2 1 6 6 H 1.48500 * 109.47156 * 60.00196 * 3 2 1 7 7 C 1.37876 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99672 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.65113 * 57.11319 * 9 7 2 11 11 C 1.52893 * 110.54632 * 293.53048 * 9 7 2 12 12 O 1.20830 * 126.08346 * 92.37557 * 11 9 7 13 13 O 1.34470 * 107.48171 * 271.97915 * 11 9 7 14 14 C 1.45424 * 109.80161 * 327.46337 * 13 11 9 15 15 H 1.09003 * 112.42644 * 143.73251 * 14 13 11 16 16 C 1.54564 * 109.87742 * 268.24052 * 14 13 11 17 17 C 1.55102 * 102.64970 * 137.35935 * 16 14 13 18 18 N 1.48692 * 102.57139 * 320.29869 * 17 16 14 19 19 C 1.47999 * 105.61385 * 41.30763 * 18 17 16 20 20 H 1.09002 * 112.45610 * 97.54036 * 19 18 17 21 21 H 0.97002 * 120.00091 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.77459 * 19.07192 * 16 14 13 23 23 H 1.08992 * 110.77935 * 255.64888 * 16 14 13 24 24 H 1.08996 * 110.78975 * 202.02658 * 17 16 14 25 25 H 1.08997 * 110.78777 * 78.56616 * 17 16 14 26 26 H 1.00899 * 110.99716 * 280.91819 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5788 -2.5549 -0.8568 11 6 0.4881 -2.6783 1.3123 12 8 -0.6558 -2.3500 1.5213 13 8 1.3200 -3.2744 2.1847 14 6 2.2178 -4.1716 1.4749 15 1 3.2186 -4.1854 1.9065 16 6 1.6095 -5.5916 1.4238 17 6 1.8985 -6.0326 -0.0349 18 7 1.6439 -4.7870 -0.8060 19 6 2.2320 -3.6930 -0.0012 20 1 3.2291 -3.4147 -0.3424 21 1 -0.4850 0.8401 0.0004 22 1 0.5365 -5.5595 1.6125 23 1 2.1084 -6.2517 2.1332 24 1 1.2154 -6.8243 -0.3422 25 1 2.9353 -6.3504 -0.1447 26 1 0.6548 -4.6430 -0.9440 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595848.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:02 Heat of formation + Delta-G solvation = -75.191560 kcal Electronic energy + Delta-G solvation = -12975.545980 eV Core-core repulsion = 10633.269845 eV Total energy + Delta-G solvation = -2342.276135 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.40005 -36.95198 -35.23387 -33.27336 -30.62502 -28.67974 -26.35309 -23.82900 -21.50566 -20.40906 -19.70803 -16.91004 -16.22124 -15.42650 -15.19151 -14.66043 -14.47562 -14.00623 -13.54807 -12.48364 -12.11934 -11.99699 -11.82710 -11.15172 -11.09578 -10.98400 -10.91051 -10.59479 -9.97623 -9.67507 -9.52905 -8.88636 -8.41520 -8.29416 -6.17806 -4.29940 3.21873 3.30580 3.34012 3.38404 4.23770 4.29981 4.59508 4.90517 5.02097 5.11917 5.31306 5.42155 5.68976 5.73867 5.85355 5.93911 6.10667 6.30086 6.62142 6.85573 7.30602 7.61206 7.67349 7.90978 7.96019 8.70056 8.97504 9.35359 10.87468 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.052670 B = 0.012853 C = 0.011915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.481159 B = 2177.993959 C = 2349.403140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.001 4.001 10 H 0.073 0.927 11 C 0.477 3.523 12 O -0.454 6.454 13 O -0.366 6.366 14 C 0.064 3.936 15 H 0.112 0.888 16 C -0.180 4.180 17 C 0.042 3.958 18 N -0.670 5.670 19 C 0.046 3.954 20 H 0.115 0.885 21 H 0.267 0.733 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 -8.902 0.314 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.021 4.021 10 H 0.090 0.910 11 C 0.318 3.682 12 O -0.335 6.335 13 O -0.285 6.285 14 C 0.006 3.994 15 H 0.130 0.870 16 C -0.219 4.219 17 C -0.088 4.088 18 N -0.298 5.298 19 C -0.064 4.064 20 H 0.132 0.868 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.658 -8.669 0.118 9.842 hybrid contribution -0.210 1.070 0.881 1.402 sum 4.448 -7.599 0.999 8.862 Atomic orbital electron populations 1.70069 1.05838 1.27367 1.45671 1.25190 0.95074 0.99989 0.94234 0.86358 0.80049 0.82870 0.77808 1.19369 1.20601 1.20797 1.20710 0.92941 0.88160 1.54377 0.91008 1.20620 0.93742 0.94383 0.93354 0.90979 1.24836 0.83721 0.72169 0.87425 1.90552 1.14633 1.46864 1.81497 1.86880 1.46498 1.56584 1.38555 1.24503 0.93204 0.87488 0.94174 0.86976 1.23703 1.02135 0.96625 0.99468 1.23186 1.02050 0.93699 0.89862 1.62888 1.20046 1.01711 1.45186 1.23849 1.01389 0.92161 0.89026 0.86761 0.92328 0.90750 0.90225 0.90626 0.89957 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 12.18 55.43 0.68 -24.65 15 2 C 0.06 1.73 5.35 -17.82 -0.10 1.63 15 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.05 8.54 -34.44 -0.29 -14.35 15 8 H 0.07 1.84 7.58 -52.49 -0.40 1.44 15 9 C 0.00 -0.02 2.38 -91.03 -0.22 -0.23 15 10 H 0.07 1.90 7.60 -51.93 -0.39 1.50 15 11 C 0.48 12.51 7.34 37.10 0.27 12.78 15 12 O -0.45 -13.38 17.27 -18.29 -0.32 -13.69 15 13 O -0.37 -8.53 10.70 -39.45 -0.42 -8.95 15 14 C 0.06 1.15 4.56 -24.75 -0.11 1.04 15 15 H 0.11 1.72 8.14 -51.93 -0.42 1.29 15 16 C -0.18 -2.61 6.74 -24.80 -0.17 -2.78 15 17 C 0.04 0.55 7.55 -1.72 -0.01 0.54 15 18 N -0.67 -11.26 7.41 -101.35 -0.75 -12.01 15 19 C 0.05 0.88 4.06 -65.15 -0.26 0.62 15 20 H 0.11 2.15 7.77 -51.93 -0.40 1.75 15 21 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 22 H 0.07 1.19 8.06 -51.93 -0.42 0.77 15 23 H 0.08 0.95 8.14 -51.93 -0.42 0.52 15 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.34 5.93 7.95 -39.29 -0.31 5.62 15 LS Contribution 224.77 15.07 3.39 3.39 Total: -1.00 -31.44 224.77 -6.09 -37.53 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -2.75 Total: 3.04 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.89 Total: -0.75 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.08 Total: -36.66 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.74 Total: -22.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.44 -6.09 -37.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595848.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.657 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds