Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48506 * 109.47084 * 269.99830 * 3 2 1 5 5 H 1.48499 * 109.47464 * 29.99992 * 3 2 1 6 6 H 1.48497 * 109.47180 * 150.00104 * 3 2 1 7 7 C 1.39927 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99733 * 163.54716 * 7 2 1 9 9 C 1.41351 * 120.00096 * 343.54113 * 7 2 1 10 10 C 1.40804 * 120.22013 * 334.15846 * 9 7 2 11 11 C 1.37589 * 119.90654 * 180.02562 * 10 9 7 12 12 C 1.38603 * 120.35404 * 359.97438 * 11 10 9 13 13 C 1.39172 * 120.44480 * 0.02562 * 12 11 10 14 14 N 1.39775 * 119.95282 * 179.97438 * 13 12 11 15 15 C 1.38475 * 120.08711 * 0.25531 * 13 12 11 16 16 Cl 1.73600 * 120.17729 * 179.72482 * 15 13 12 17 17 H 0.97000 * 119.99438 * 0.02562 * 1 2 3 18 18 H 1.08000 * 120.05053 * 359.97438 * 10 9 7 19 19 H 1.08002 * 119.82617 * 179.97438 * 11 10 9 20 20 H 1.07993 * 119.77759 * 180.02562 * 12 11 10 21 21 H 0.97004 * 120.00288 * 0.02562 * 14 13 12 22 22 H 0.96999 * 120.00021 * 179.72673 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4402 0.7000 7 6 2.0081 -1.2118 -0.0005 8 1 3.0549 -1.2308 -0.2655 9 6 1.3447 -2.4110 0.3457 10 6 0.2134 -2.3787 1.1834 11 6 -0.4270 -3.5500 1.5168 12 6 0.0351 -4.7634 1.0319 13 6 1.1520 -4.8124 0.2030 14 7 1.6094 -6.0418 -0.2797 15 6 1.8140 -3.6454 -0.1395 16 17 3.2116 -3.7045 -1.1676 17 1 -0.4849 0.8401 -0.0004 18 1 -0.1507 -1.4360 1.5643 19 1 -1.2944 -3.5237 2.1597 20 1 -0.4749 -5.6770 1.2992 21 1 1.1484 -6.8601 -0.0371 22 1 2.3854 -6.0764 -0.8607 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621002.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -17.415302 kcal Electronic energy + Delta-G solvation = -10153.965368 eV Core-core repulsion = 8119.070670 eV Total energy + Delta-G solvation = -2034.894699 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 197.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.56819 -36.70000 -36.16086 -34.29156 -31.51251 -28.89787 -27.13604 -22.76210 -22.46726 -19.25927 -17.62519 -17.31323 -16.46589 -16.36587 -14.83895 -14.64365 -14.30102 -14.17307 -13.27158 -12.83329 -12.79655 -12.30619 -12.07407 -12.05849 -11.52442 -11.26647 -11.05777 -10.77703 -9.24191 -8.64671 -8.07341 -6.34890 0.94011 1.23202 1.40437 1.52005 1.58220 1.97767 2.22949 2.77223 3.29613 3.73166 4.53391 4.80197 5.09760 5.18090 5.30203 5.43335 5.74432 6.00648 6.15595 6.21755 6.58402 6.79037 6.92536 7.04464 7.25305 8.33343 Molecular weight = 197.03amu Principal moments of inertia in cm(-1) A = 0.043016 B = 0.014325 C = 0.011055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.770975 B = 1954.199382 C = 2532.082913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.481 4.481 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.226 4.226 11 C -0.067 4.067 12 C -0.305 4.305 13 C 0.241 3.759 14 N -0.873 5.873 15 C -0.231 4.231 16 Cl -0.108 7.108 17 H 0.289 0.711 18 H 0.105 0.895 19 H 0.118 0.882 20 H 0.125 0.875 21 H 0.403 0.597 22 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -3.771 0.301 4.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.510 4.510 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.247 4.247 11 C -0.086 4.086 12 C -0.329 4.329 13 C 0.136 3.864 14 N -0.415 5.415 15 C -0.263 4.263 16 Cl -0.080 7.080 17 H 0.100 0.900 18 H 0.123 0.877 19 H 0.136 0.864 20 H 0.143 0.857 21 H 0.233 0.767 22 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.603 -3.586 0.220 3.934 hybrid contribution 0.429 0.410 -0.320 0.674 sum 2.032 -3.175 -0.101 3.771 Atomic orbital electron populations 1.69898 1.08904 1.30645 1.34624 1.26734 0.95469 1.04368 0.91179 0.85259 0.79226 0.76122 0.79486 1.18836 1.18757 1.18369 1.19820 0.98042 0.91849 1.41257 0.90259 1.17563 0.91267 0.91283 0.88271 1.21063 1.01132 0.97445 1.05061 1.20804 0.97909 0.92275 0.97566 1.20116 1.02684 0.98013 1.12051 1.17330 0.92045 0.85013 0.91968 1.42318 1.36381 1.04854 1.57992 1.20469 0.99053 0.94554 1.12242 1.98145 1.43056 1.98412 1.68430 0.89998 0.87697 0.86419 0.85741 0.76714 0.77560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.41 10.96 21.82 0.24 -42.17 14 2 C 0.04 1.95 5.16 85.25 0.44 2.39 14 3 Si 0.98 38.47 29.59 68.60 2.03 40.50 14 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 5 H -0.26 -9.72 7.11 99.48 0.71 -9.01 14 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 14 7 C -0.48 -26.10 8.52 23.45 0.20 -25.90 14 8 H 0.08 4.24 7.12 -2.91 -0.02 4.22 14 9 C 0.12 6.53 5.56 -21.29 -0.12 6.42 14 10 C -0.23 -11.88 8.68 22.74 0.20 -11.69 14 11 C -0.07 -3.04 10.01 22.20 0.22 -2.81 14 12 C -0.31 -12.96 9.90 22.58 0.22 -12.74 14 13 C 0.24 10.54 6.74 38.16 0.26 10.80 14 14 N -0.87 -29.41 9.04 -51.41 -0.47 -29.87 14 15 C -0.23 -11.44 6.39 22.92 0.15 -11.30 14 16 Cl -0.11 -4.75 26.22 -2.72 -0.07 -4.82 14 17 H 0.29 13.53 8.30 -92.71 -0.77 12.76 14 18 H 0.11 5.73 6.21 -2.91 -0.02 5.71 14 19 H 0.12 4.62 8.06 -2.91 -0.02 4.60 14 20 H 0.12 4.43 8.06 -2.91 -0.02 4.40 14 21 H 0.40 10.83 8.84 -92.71 -0.82 10.01 14 22 H 0.40 12.68 7.49 -92.71 -0.69 11.98 14 Total: -1.00 -58.35 212.16 3.05 -55.30 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.25 Total: 25.91 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 1.57 Total: -44.84 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.23 Total: -72.04 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 17 Polarization: -4.75 SS G_CDS: -0.07 Total: -4.82 kcal Total: -58.35 3.05 -55.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621002.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.882 kcal (2) G-P(sol) polarization free energy of solvation -58.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds