Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38177 * 122.64951 * 2 1 4 4 C 1.33547 * 115.02314 * 179.80042 * 3 2 1 5 5 S 1.75859 * 109.75632 * 0.44547 * 4 3 2 6 6 C 1.34594 * 122.64171 * 180.28928 * 2 1 3 7 7 N 1.38652 * 125.25453 * 0.02562 * 6 2 1 8 8 C 1.46500 * 119.99680 * 274.65793 * 7 6 2 9 9 C 1.36826 * 120.00099 * 94.66446 * 7 6 2 10 10 H 1.07998 * 119.99878 * 321.03033 * 9 7 6 11 11 C 1.38618 * 120.00129 * 141.03006 * 9 7 6 12 12 N 1.31698 * 120.00393 * 156.53538 * 11 9 7 13 13 Si 1.86803 * 120.00022 * 336.53475 * 11 9 7 14 14 H 1.48503 * 109.47090 * 92.44171 * 13 11 9 15 15 H 1.48494 * 109.47364 * 212.43888 * 13 11 9 16 16 H 1.48501 * 109.47335 * 332.44043 * 13 11 9 17 17 H 1.09003 * 109.47283 * 264.59303 * 1 2 3 18 18 H 1.09000 * 109.46896 * 24.59401 * 1 2 3 19 19 H 1.08998 * 109.47265 * 144.59432 * 1 2 3 20 20 H 1.07995 * 122.48848 * 0.02562 * 3 2 1 21 21 H 1.08001 * 125.12331 * 180.19062 * 4 3 2 22 22 H 1.08998 * 109.47427 * 84.80054 * 8 7 6 23 23 H 1.09003 * 109.47227 * 204.79362 * 8 7 6 24 24 H 1.08999 * 109.47259 * 324.79351 * 8 7 6 25 25 H 0.96995 * 120.00842 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2525 1.1634 0.0000 4 6 3.5761 0.9862 0.0042 5 16 3.9457 -0.7331 -0.0043 6 6 2.2330 -1.1333 -0.0057 7 7 1.7113 -2.4179 -0.0127 8 6 1.3397 -3.0645 1.2483 9 6 1.5436 -3.0818 -1.1973 10 1 1.1987 -2.5487 -2.0709 11 6 1.8163 -4.4386 -1.2761 12 7 1.2490 -5.1711 -2.2122 13 14 2.9885 -5.2282 -0.0546 14 1 2.2184 -5.7557 1.1004 15 1 3.7153 -6.3420 -0.7151 16 1 3.9635 -4.2146 0.4219 17 1 -0.3634 -0.0968 1.0231 18 1 -0.3633 0.9344 -0.4277 19 1 -0.3634 -0.8376 -0.5954 20 1 1.7984 2.1433 0.0004 21 1 4.3092 1.7793 0.0078 22 1 0.3294 -2.7647 1.5265 23 1 1.3768 -4.1470 1.1264 24 1 2.0366 -2.7629 2.0304 25 1 1.4395 -6.1206 -2.2671 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258811304.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = 49.037657 kcal Electronic energy + Delta-G solvation = -10575.842140 eV Core-core repulsion = 8681.705859 eV Total energy + Delta-G solvation = -1894.136281 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.88119 -35.35723 -31.92533 -29.67922 -26.98812 -25.98883 -23.04630 -21.51579 -17.99765 -17.02365 -16.61450 -15.20224 -14.66486 -13.61995 -13.32323 -13.15134 -12.61108 -12.47937 -12.23887 -11.54792 -11.42310 -11.16293 -11.00111 -10.69557 -10.28656 -10.09279 -9.75958 -8.83077 -7.68774 -7.48137 -7.16901 -6.33972 -3.78062 1.88386 2.56994 3.03883 3.15288 3.31684 3.38566 3.49445 4.24631 4.78148 5.09940 5.61790 6.01517 6.06413 6.11860 6.17148 6.29962 6.33367 6.50261 6.65412 6.81421 7.22145 7.33385 7.70974 8.21655 8.67460 9.34305 9.67353 10.78252 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.044545 B = 0.014617 C = 0.012835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.422220 B = 1915.183223 C = 2180.930160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.164 4.164 3 C -0.117 4.117 4 C -0.229 4.229 5 S -0.048 6.048 6 C 0.146 3.854 7 N -0.496 5.496 8 C 0.101 3.899 9 C -0.283 4.283 10 H 0.092 0.908 11 C 0.053 3.947 12 N -0.872 5.872 13 Si 0.874 3.126 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.263 1.263 17 H 0.052 0.948 18 H 0.050 0.950 19 H 0.071 0.929 20 H 0.124 0.876 21 H 0.145 0.855 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 7.370 5.910 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.179 4.179 3 C -0.149 4.149 4 C -0.365 4.365 5 S 0.214 5.786 6 C -0.068 4.068 7 N -0.211 5.211 8 C -0.043 4.043 9 C -0.413 4.413 10 H 0.109 0.891 11 C -0.153 4.153 12 N -0.509 5.509 13 Si 0.702 3.298 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.187 1.187 17 H 0.071 0.929 18 H 0.069 0.931 19 H 0.089 0.911 20 H 0.142 0.858 21 H 0.163 0.837 22 H 0.055 0.945 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.530 6.289 5.822 8.936 hybrid contribution -0.342 0.288 0.471 0.649 sum 2.188 6.577 6.292 9.362 Atomic orbital electron populations 1.20238 0.90400 1.01705 1.01047 1.19312 0.96928 0.91934 1.09681 1.19657 0.93041 0.98136 1.04074 1.25013 0.99031 0.98257 1.14169 1.84963 1.19757 1.00803 1.73046 1.22615 0.91613 0.89818 1.02758 1.41312 1.63365 1.11724 1.04666 1.21675 0.98385 0.97851 0.86423 1.18853 1.41444 0.91575 0.89408 0.89093 1.25499 0.96577 0.96624 0.96579 1.69881 1.39851 1.06851 1.34367 0.86997 0.82710 0.79310 0.80830 1.20428 1.21799 1.18679 0.92917 0.93076 0.91053 0.85837 0.83727 0.94535 0.92042 0.94215 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 9.97 36.01 0.36 -0.96 15 2 C -0.16 -3.28 5.83 -105.93 -0.62 -3.89 15 3 C -0.12 -2.08 9.95 -41.25 -0.41 -2.49 15 4 C -0.23 -4.05 11.22 29.09 0.33 -3.73 15 5 S -0.05 -1.01 23.34 -107.50 -2.51 -3.52 15 6 C 0.15 3.30 5.86 -15.75 -0.09 3.21 15 7 N -0.50 -12.04 2.22 -121.80 -0.27 -12.31 15 8 C 0.10 2.16 9.34 59.85 0.56 2.72 15 9 C -0.28 -7.80 9.85 -15.18 -0.15 -7.95 15 10 H 0.09 2.72 8.06 -52.49 -0.42 2.30 15 11 C 0.05 1.47 5.23 -17.47 -0.09 1.38 15 12 N -0.87 -25.28 13.97 55.48 0.78 -24.50 15 13 Si 0.87 21.27 25.31 -169.99 -4.30 16.97 15 14 H -0.28 -6.39 6.55 56.52 0.37 -6.02 15 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 16 H -0.26 -6.48 7.11 56.52 0.40 -6.08 15 17 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 18 H 0.05 0.77 8.11 -51.93 -0.42 0.35 15 19 H 0.07 1.41 7.99 -51.93 -0.42 1.00 15 20 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 21 H 0.14 2.12 8.06 -52.49 -0.42 1.70 15 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.06 1.38 3.74 -51.93 -0.19 1.18 15 24 H 0.04 0.78 8.09 -51.93 -0.42 0.36 15 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 229.57 15.07 3.46 3.46 Total: -1.00 -28.71 229.57 -5.70 -34.40 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.73 Total: -2.80 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.12 Total: -11.70 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.50 Total: -36.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.30 Total: 16.97 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.51 Total: -3.52 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.71 -5.70 -34.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258811304.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.442 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds