Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38177 * 122.64951 * 2 1 4 4 C 1.33547 * 115.02314 * 179.80042 * 3 2 1 5 5 S 1.75859 * 109.75632 * 0.44547 * 4 3 2 6 6 C 1.34594 * 122.64171 * 180.28928 * 2 1 3 7 7 N 1.38652 * 125.25453 * 0.02562 * 6 2 1 8 8 C 1.46500 * 119.99680 * 274.65793 * 7 6 2 9 9 C 1.36826 * 120.00099 * 94.66446 * 7 6 2 10 10 H 1.07998 * 119.99878 * 321.03033 * 9 7 6 11 11 C 1.38618 * 120.00129 * 141.03006 * 9 7 6 12 12 N 1.31698 * 120.00393 * 156.53538 * 11 9 7 13 13 Si 1.86803 * 120.00022 * 336.53475 * 11 9 7 14 14 H 1.48503 * 109.47090 * 92.44171 * 13 11 9 15 15 H 1.48494 * 109.47364 * 212.43888 * 13 11 9 16 16 H 1.48501 * 109.47335 * 332.44043 * 13 11 9 17 17 H 1.09003 * 109.47283 * 264.59303 * 1 2 3 18 18 H 1.09000 * 109.46896 * 24.59401 * 1 2 3 19 19 H 1.08998 * 109.47265 * 144.59432 * 1 2 3 20 20 H 1.07995 * 122.48848 * 0.02562 * 3 2 1 21 21 H 1.08001 * 125.12331 * 180.19062 * 4 3 2 22 22 H 1.08998 * 109.47427 * 84.80054 * 8 7 6 23 23 H 1.09003 * 109.47227 * 204.79362 * 8 7 6 24 24 H 1.08999 * 109.47259 * 324.79351 * 8 7 6 25 25 H 0.96995 * 120.00842 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2525 1.1634 0.0000 4 6 3.5761 0.9862 0.0042 5 16 3.9457 -0.7331 -0.0043 6 6 2.2330 -1.1333 -0.0057 7 7 1.7113 -2.4179 -0.0127 8 6 1.3397 -3.0645 1.2483 9 6 1.5436 -3.0818 -1.1973 10 1 1.1987 -2.5487 -2.0709 11 6 1.8163 -4.4386 -1.2761 12 7 1.2490 -5.1711 -2.2122 13 14 2.9885 -5.2282 -0.0546 14 1 2.2184 -5.7557 1.1004 15 1 3.7153 -6.3420 -0.7151 16 1 3.9635 -4.2146 0.4219 17 1 -0.3634 -0.0968 1.0231 18 1 -0.3633 0.9344 -0.4277 19 1 -0.3634 -0.8376 -0.5954 20 1 1.7984 2.1433 0.0004 21 1 4.3092 1.7793 0.0078 22 1 0.3294 -2.7647 1.5265 23 1 1.3768 -4.1470 1.1264 24 1 2.0366 -2.7629 2.0304 25 1 1.4395 -6.1206 -2.2671 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258811304.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = 31.754672 kcal Electronic energy + Delta-G solvation = -10576.591587 eV Core-core repulsion = 8681.705859 eV Total energy + Delta-G solvation = -1894.885728 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.50145 -37.07855 -33.93665 -31.16489 -28.61312 -27.88359 -24.74301 -23.10605 -19.78126 -18.73966 -18.41594 -17.08282 -16.23864 -15.35000 -15.04380 -14.77216 -14.42998 -14.21575 -13.74957 -13.28968 -12.97335 -12.71733 -12.56185 -12.46452 -12.21677 -11.90555 -11.45412 -10.84728 -9.26914 -9.12591 -8.99642 -8.42784 -5.87004 0.32555 0.98594 1.21938 1.31070 1.43954 1.52840 1.99819 2.23902 2.85693 3.22254 4.26206 4.39113 4.57979 4.65637 4.71993 4.81153 4.84608 4.92336 5.24487 5.31592 5.66421 5.74247 5.83138 6.09956 6.75451 7.36271 7.71747 8.74512 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.044545 B = 0.014617 C = 0.012835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.422220 B = 1915.183223 C = 2180.930160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.152 4.152 3 C -0.122 4.122 4 C -0.202 4.202 5 S -0.080 6.080 6 C 0.099 3.901 7 N -0.512 5.512 8 C 0.100 3.900 9 C -0.281 4.281 10 H 0.048 0.952 11 C 0.006 3.994 12 N -0.921 5.921 13 Si 0.934 3.066 14 H -0.255 1.255 15 H -0.294 1.294 16 H -0.268 1.268 17 H 0.070 0.930 18 H 0.081 0.919 19 H 0.040 0.960 20 H 0.167 0.833 21 H 0.185 0.815 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 9.622 7.545 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.337 4.337 5 S 0.182 5.818 6 C -0.114 4.114 7 N -0.228 5.228 8 C -0.043 4.043 9 C -0.410 4.410 10 H 0.065 0.935 11 C -0.195 4.195 12 N -0.561 5.561 13 Si 0.760 3.240 14 H -0.181 1.181 15 H -0.221 1.221 16 H -0.193 1.193 17 H 0.089 0.911 18 H 0.100 0.900 19 H 0.059 0.941 20 H 0.184 0.816 21 H 0.202 0.798 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.067 8.555 7.477 11.769 hybrid contribution -0.515 -0.112 -0.016 0.527 sum 2.552 8.443 7.461 11.553 Atomic orbital electron populations 1.20269 0.88988 1.02039 1.01844 1.19830 0.98236 0.92095 1.06641 1.20036 0.92841 0.99027 1.03329 1.25480 1.00007 0.96561 1.11688 1.84928 1.18102 1.04501 1.74305 1.22484 0.91971 0.89866 1.07109 1.41105 1.65434 1.12189 1.04116 1.21717 0.99745 0.96996 0.85879 1.18525 1.41143 0.91766 0.89597 0.93471 1.26031 0.97821 0.97064 0.98608 1.69980 1.41854 1.07250 1.37029 0.86034 0.80510 0.78015 0.79412 1.18075 1.22105 1.19276 0.91106 0.89986 0.94112 0.81607 0.79763 0.93043 0.93264 0.92472 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.38 9.97 71.24 0.71 -1.67 15 2 C -0.15 -5.72 5.83 -20.71 -0.12 -5.84 15 3 C -0.12 -3.75 9.95 21.19 0.21 -3.54 15 4 C -0.20 -6.27 11.22 66.76 0.75 -5.52 15 5 S -0.08 -3.23 23.34 -56.49 -1.32 -4.54 15 6 C 0.10 4.36 5.86 82.78 0.49 4.84 15 7 N -0.51 -24.96 2.22 -539.26 -1.20 -26.16 15 8 C 0.10 4.21 9.34 127.77 1.19 5.41 15 9 C -0.28 -16.01 9.85 84.00 0.83 -15.18 15 10 H 0.05 3.02 8.06 -2.91 -0.02 2.99 15 11 C 0.01 0.35 5.23 84.80 0.44 0.79 15 12 N -0.92 -55.45 13.97 21.62 0.30 -55.15 15 13 Si 0.93 44.72 25.31 68.60 1.74 46.46 15 14 H -0.26 -11.16 6.55 99.48 0.65 -10.51 15 15 H -0.29 -14.01 7.11 99.48 0.71 -13.31 15 16 H -0.27 -12.95 7.11 99.48 0.71 -12.24 15 17 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 18 H 0.08 2.17 8.11 -2.39 -0.02 2.15 15 19 H 0.04 1.59 7.99 -2.39 -0.02 1.57 15 20 H 0.17 3.78 8.06 -2.91 -0.02 3.76 15 21 H 0.19 4.30 8.06 -2.91 -0.02 4.27 15 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.05 2.17 3.74 -2.39 -0.01 2.16 15 24 H 0.06 2.16 8.09 -2.39 -0.02 2.14 15 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -63.67 229.57 5.14 -58.53 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.12 Total: 1.58 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.50 Total: -20.71 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -0.90 Total: -81.31 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.74 Total: 46.46 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.32 Total: -4.54 kcal Total: -63.67 5.14 -58.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258811304.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.282 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds