Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34330 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66836 * 179.73187 * 3 2 1 5 5 C 1.30250 * 108.70027 * 0.27078 * 4 3 2 6 6 C 1.50703 * 125.61985 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46880 * 59.97418 * 6 5 4 8 8 O 1.42902 * 109.47231 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.46984 * 299.97075 * 6 5 4 10 10 H 1.07998 * 120.00445 * 0.02562 * 9 6 5 11 11 C 1.37880 * 120.00010 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99844 * 0.02562 * 11 9 6 13 13 Si 1.86796 * 120.00325 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46686 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47495 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.46859 * 240.00317 * 13 11 9 17 17 O 1.33972 * 108.76227 * 359.97438 * 5 4 3 18 18 H 1.09008 * 109.47293 * 90.02316 * 1 2 3 19 19 H 1.09000 * 109.47344 * 210.01972 * 1 2 3 20 20 H 1.09001 * 109.47374 * 330.02234 * 1 2 3 21 21 H 1.08002 * 126.16884 * 0.02562 * 3 2 1 22 22 H 1.08997 * 109.47411 * 60.00253 * 7 6 5 23 23 H 1.09001 * 109.47146 * 179.97438 * 7 6 5 24 24 H 1.09001 * 109.47453 * 299.99610 * 7 6 5 25 25 H 0.96697 * 113.99968 * 60.00172 * 8 6 5 26 26 H 0.97004 * 120.00082 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0060 5 6 3.5765 -0.6547 0.0038 6 6 4.8004 -1.5340 0.0093 7 6 5.6285 -1.2474 1.2635 8 8 4.4012 -2.9061 0.0053 9 6 5.6295 -1.2485 -1.2163 10 1 5.3031 -0.5045 -1.9278 11 6 6.8054 -1.9365 -1.4287 12 7 7.2031 -2.8421 -0.5620 13 14 7.8335 -1.5822 -2.9475 14 1 7.1717 -0.5287 -3.7584 15 1 9.1817 -1.1161 -2.5350 16 1 7.9638 -2.8204 -3.7568 17 8 2.3074 -1.0840 -0.0031 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3634 -0.8898 0.5141 20 1 -0.3634 0.8902 0.5135 21 1 1.9821 2.1113 0.0004 22 1 5.0288 -1.4539 2.1499 23 1 6.5135 -1.8837 1.2677 24 1 5.9331 -0.2008 1.2665 25 1 3.8715 -3.1594 -0.7630 26 1 8.0306 -3.3259 -0.7112 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259553007.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = -56.953017 kcal Electronic energy + Delta-G solvation = -12651.028512 eV Core-core repulsion = 10309.543260 eV Total energy + Delta-G solvation = -2341.485253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.14702 -38.31876 -35.63576 -34.42749 -33.35760 -31.43164 -27.60469 -27.23986 -24.21720 -22.65857 -21.52101 -19.24696 -18.34321 -17.43361 -16.80660 -16.38704 -15.39331 -15.30715 -14.48788 -14.13786 -13.81184 -13.49844 -13.21319 -13.13032 -12.98864 -12.79494 -12.56093 -12.18965 -12.09028 -11.59967 -11.30548 -10.71874 -10.63584 -9.40997 -8.16581 -6.44776 0.61266 1.41108 1.43091 1.54859 1.86704 1.88441 2.41087 3.02675 3.36844 3.87906 4.06151 4.18618 4.48292 4.70119 4.71360 4.81649 4.89787 5.14693 5.26435 5.37354 5.42032 5.59779 5.74213 5.97702 6.56225 6.91946 7.19856 7.35866 8.83907 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.052914 B = 0.011172 C = 0.010470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.034032 B = 2505.572854 C = 2673.620306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.078 4.078 3 C -0.068 4.068 4 N -0.514 5.514 5 C 0.179 3.821 6 C 0.335 3.665 7 C -0.107 4.107 8 O -0.560 6.560 9 C -0.568 4.568 10 H 0.047 0.953 11 C 0.042 3.958 12 N -0.880 5.880 13 Si 0.966 3.034 14 H -0.275 1.275 15 H -0.272 1.272 16 H -0.272 1.272 17 O -0.218 6.218 18 H 0.096 0.904 19 H 0.081 0.919 20 H 0.117 0.883 21 H 0.210 0.790 22 H 0.028 0.972 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.364 0.636 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 4.187 -0.103 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.206 4.206 4 N -0.244 5.244 5 C -0.028 4.028 6 C 0.294 3.706 7 C -0.165 4.165 8 O -0.364 6.364 9 C -0.606 4.606 10 H 0.065 0.935 11 C -0.162 4.162 12 N -0.516 5.516 13 Si 0.791 3.209 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.197 1.197 17 O -0.105 6.105 18 H 0.114 0.886 19 H 0.100 0.900 20 H 0.135 0.865 21 H 0.227 0.773 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.210 0.790 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.963 4.357 0.533 9.980 hybrid contribution -0.215 -0.156 -1.182 1.211 sum -9.178 4.201 -0.648 10.114 Atomic orbital electron populations 1.20429 0.80356 1.05595 1.04870 1.24471 0.97029 0.84216 1.07336 1.23687 0.87332 1.01827 1.07717 1.70351 1.24302 1.09856 1.19877 1.28413 0.84632 0.91595 0.98154 1.17425 0.80758 0.75944 0.96486 1.21494 1.00703 1.00975 0.93359 1.86503 1.74060 1.27781 1.48019 1.21456 1.08042 1.23940 1.07200 0.93468 1.25679 0.97445 0.93678 0.99442 1.70093 1.22500 1.23117 1.35852 0.85403 0.78394 0.78164 0.78965 1.19999 1.19762 1.19750 1.84411 1.18179 1.37912 1.70040 0.88573 0.90021 0.86458 0.77303 0.95328 0.89704 0.92914 0.78998 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.43 71.23 0.74 -0.36 15 2 C -0.08 -2.65 7.39 24.79 0.18 -2.46 15 3 C -0.07 -2.47 11.80 83.39 0.98 -1.48 15 4 N -0.51 -24.22 11.29 -303.82 -3.43 -27.65 15 5 C 0.18 8.81 6.52 88.34 0.58 9.38 15 6 C 0.33 17.85 0.95 -12.29 -0.01 17.83 15 7 C -0.11 -5.57 8.60 71.98 0.62 -4.95 15 8 O -0.56 -29.53 12.19 -136.31 -1.66 -31.20 15 9 C -0.57 -32.02 8.20 25.60 0.21 -31.81 15 10 H 0.05 2.75 7.74 -2.91 -0.02 2.73 15 11 C 0.04 2.28 5.24 84.66 0.44 2.72 15 12 N -0.88 -49.32 10.87 21.45 0.23 -49.09 15 13 Si 0.97 43.11 29.54 68.60 2.03 45.14 15 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 17 O -0.22 -9.48 10.54 8.91 0.09 -9.39 15 18 H 0.10 1.58 8.14 -2.38 -0.02 1.56 15 19 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.12 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.21 5.60 8.06 -2.91 -0.02 5.58 15 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 23 H 0.08 4.68 6.07 -2.39 -0.01 4.67 15 24 H 0.05 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.36 17.23 9.03 -74.06 -0.67 16.56 15 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 Total: -1.00 -67.05 234.80 1.53 -65.52 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.52 Total: 17.80 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 3.75 Total: -11.13 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.20 Total: -76.74 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.57 Total: -40.58 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -67.05 1.53 -65.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259553007.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.566 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds