Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35431 * 127.90830 * 2 1 4 4 C 1.50706 * 126.27601 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46953 * 94.71151 * 4 3 2 6 6 C 1.50706 * 109.46573 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72054 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 89.99430 * 10 8 6 12 12 H 1.48494 * 109.47031 * 209.99977 * 10 8 6 13 13 H 1.48504 * 109.46680 * 329.99678 * 10 8 6 14 14 O 1.33641 * 107.44625 * 179.71983 * 3 2 1 15 15 N 1.20961 * 112.12392 * 0.26843 * 14 3 2 16 16 H 0.96999 * 124.71121 * 179.97438 * 15 14 3 17 17 C 1.34865 * 110.58776 * 359.97438 * 15 14 3 18 18 O 1.22043 * 127.16797 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.47112 * 89.99570 * 1 2 3 20 20 H 1.09003 * 109.46490 * 209.99349 * 1 2 3 21 21 H 1.08998 * 109.47025 * 329.99183 * 1 2 3 22 22 H 1.09000 * 109.46974 * 334.70899 * 4 3 2 23 23 H 1.09001 * 109.46547 * 214.70989 * 4 3 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 5 4 3 25 25 H 1.09001 * 109.47362 * 299.99339 * 5 4 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.0685 0.0000 4 6 1.9284 2.5186 -0.0005 5 6 1.9029 3.0419 1.4369 6 6 1.4927 4.4921 1.4362 7 1 1.2767 4.9917 0.5035 8 6 1.3984 5.1823 2.6261 9 7 1.0410 6.4479 2.6255 10 14 1.7796 4.3202 4.2388 11 1 3.2233 4.4719 4.5521 12 1 0.9707 4.9257 5.3270 13 1 1.4479 2.8776 4.1194 14 8 3.5912 0.6014 0.0062 15 7 3.6263 -0.6077 0.0048 16 1 4.4393 -1.1367 0.0081 17 6 2.3781 -1.1184 -0.0023 18 8 2.0639 -2.2977 -0.0059 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5140 22 1 0.9355 2.6147 -0.4400 23 1 2.6424 3.0981 -0.5857 24 1 2.8957 2.9457 1.8763 25 1 1.1888 2.4623 2.0220 26 1 0.9750 6.9336 3.4625 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259588319.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = 17.096353 kcal Electronic energy + Delta-G solvation = -12252.372488 eV Core-core repulsion = 9914.098257 eV Total energy + Delta-G solvation = -2338.274231 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.85464 -37.86731 -35.46257 -33.09033 -31.99450 -30.90131 -27.95679 -26.03112 -21.97620 -21.78404 -20.12184 -18.96743 -17.72977 -16.95515 -15.56785 -14.90455 -14.37797 -13.71237 -13.65127 -13.35409 -12.89832 -12.67823 -12.58835 -11.94074 -11.72265 -11.15569 -10.62725 -10.28959 -9.99748 -9.70295 -9.39045 -9.31677 -8.66833 -8.18882 -6.17358 -4.18193 1.46797 2.31842 3.05506 3.23526 3.32231 3.35180 3.67080 4.34318 4.89863 5.05903 5.16715 5.51722 5.84507 5.92706 5.99263 6.02115 6.16504 6.33532 6.39840 6.56879 6.99862 7.11343 7.58263 7.86192 8.30050 8.34800 8.84942 9.43410 10.95283 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.051928 B = 0.008920 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.076643 B = 3138.177907 C = 3182.199856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.316 4.316 3 C 0.111 3.889 4 C -0.037 4.037 5 C -0.009 4.009 6 C -0.527 4.527 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.265 1.265 14 O -0.009 6.009 15 N -0.562 5.562 16 H 0.455 0.545 17 C 0.490 3.510 18 O -0.545 6.545 19 H 0.064 0.936 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.018 0.982 25 H 0.025 0.975 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -9.549 -4.325 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.321 4.321 3 C 0.055 3.945 4 C -0.075 4.075 5 C -0.046 4.046 6 C -0.565 4.565 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.703 3.297 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.189 1.189 14 O -0.022 6.022 15 N -0.254 5.254 16 H 0.306 0.694 17 C 0.289 3.711 18 O -0.428 6.428 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.122 0.878 23 H 0.106 0.894 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.348 -9.933 -4.205 11.294 hybrid contribution 0.720 -0.596 0.959 1.339 sum 4.068 -10.529 -3.247 11.745 Atomic orbital electron populations 1.19882 0.86727 1.03030 1.01920 1.21130 0.98803 0.92154 1.20036 1.24337 0.79874 0.98736 0.91521 1.20661 1.02336 0.82009 1.02504 1.19624 0.97461 0.97624 0.89919 1.20967 1.47266 0.93056 0.95227 0.90477 1.24961 0.94299 0.94646 0.99087 1.69893 1.47477 1.08784 1.27346 0.86833 0.78734 0.80519 0.83603 1.20158 1.21136 1.18908 1.83957 1.29726 1.07061 1.81440 1.43544 1.11973 0.95816 1.74060 0.69394 1.18223 0.82048 0.90547 0.80294 1.90926 1.78804 1.17170 1.55904 0.91770 0.91513 0.90562 0.87793 0.89377 0.96335 0.95631 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.10 36.01 0.36 -0.49 15 2 C -0.32 -5.24 6.32 -104.28 -0.66 -5.90 15 3 C 0.11 1.79 6.68 -35.31 -0.24 1.55 15 4 C -0.04 -0.63 5.50 -27.88 -0.15 -0.79 15 5 C -0.01 -0.19 4.02 -27.88 -0.11 -0.30 15 6 C -0.53 -13.80 9.66 -34.44 -0.33 -14.13 15 7 H 0.08 2.13 7.99 -52.49 -0.42 1.71 15 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 9 N -0.90 -26.32 13.96 55.43 0.77 -25.55 15 10 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 13 H -0.26 -6.06 6.54 56.52 0.37 -5.69 15 14 O -0.01 -0.14 11.14 18.20 0.20 0.07 15 15 N -0.56 -7.83 6.80 29.17 0.20 -7.63 15 16 H 0.45 4.56 8.96 -40.82 -0.37 4.20 15 17 C 0.49 8.46 8.47 -14.88 -0.13 8.33 15 18 O -0.54 -10.95 18.08 4.88 0.09 -10.86 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.08 1.08 7.91 -51.93 -0.41 0.67 15 22 H 0.10 1.65 7.77 -51.93 -0.40 1.25 15 23 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 24 H 0.02 0.40 7.57 -51.93 -0.39 0.01 15 25 H 0.03 0.56 7.20 -51.93 -0.37 0.19 15 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 234.57 15.07 3.53 3.53 Total: -1.00 -31.31 234.57 -4.03 -35.33 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -2.80 Total: -1.13 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.35 Total: -9.82 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.97 Total: -33.17 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.29 Total: -10.80 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.31 -4.03 -35.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588319.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.429 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds