Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35431 * 127.90830 * 2 1 4 4 C 1.50706 * 126.27601 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46953 * 94.71151 * 4 3 2 6 6 C 1.50706 * 109.46573 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00167 * 359.72054 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99350 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00608 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47353 * 89.99430 * 10 8 6 12 12 H 1.48494 * 109.47031 * 209.99977 * 10 8 6 13 13 H 1.48504 * 109.46680 * 329.99678 * 10 8 6 14 14 O 1.33641 * 107.44625 * 179.71983 * 3 2 1 15 15 N 1.20961 * 112.12392 * 0.26843 * 14 3 2 16 16 H 0.96999 * 124.71121 * 179.97438 * 15 14 3 17 17 C 1.34865 * 110.58776 * 359.97438 * 15 14 3 18 18 O 1.22043 * 127.16797 * 179.97438 * 17 15 14 19 19 H 1.08997 * 109.47112 * 89.99570 * 1 2 3 20 20 H 1.09003 * 109.46490 * 209.99349 * 1 2 3 21 21 H 1.08998 * 109.47025 * 329.99183 * 1 2 3 22 22 H 1.09000 * 109.46974 * 334.70899 * 4 3 2 23 23 H 1.09001 * 109.46547 * 214.70989 * 4 3 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 5 4 3 25 25 H 1.09001 * 109.47362 * 299.99339 * 5 4 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.0685 0.0000 4 6 1.9284 2.5186 -0.0005 5 6 1.9029 3.0419 1.4369 6 6 1.4927 4.4921 1.4362 7 1 1.2767 4.9917 0.5035 8 6 1.3984 5.1823 2.6261 9 7 1.0410 6.4479 2.6255 10 14 1.7796 4.3202 4.2388 11 1 3.2233 4.4719 4.5521 12 1 0.9707 4.9257 5.3270 13 1 1.4479 2.8776 4.1194 14 8 3.5912 0.6014 0.0062 15 7 3.6263 -0.6077 0.0048 16 1 4.4393 -1.1367 0.0081 17 6 2.3781 -1.1184 -0.0023 18 8 2.0639 -2.2977 -0.0059 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3632 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5140 22 1 0.9355 2.6147 -0.4400 23 1 2.6424 3.0981 -0.5857 24 1 2.8957 2.9457 1.8763 25 1 1.1888 2.4623 2.0220 26 1 0.9750 6.9336 3.4625 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259588319.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -4.397324 kcal Electronic energy + Delta-G solvation = -12253.304524 eV Core-core repulsion = 9914.098257 eV Total energy + Delta-G solvation = -2339.206267 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.11099 -39.23127 -36.91167 -34.88698 -33.37893 -32.50224 -29.23491 -27.70260 -23.58250 -23.11492 -21.57223 -20.19215 -19.08901 -18.83963 -16.92557 -16.35750 -16.19418 -15.22253 -15.01284 -14.86348 -14.63529 -13.95891 -13.90550 -13.46280 -13.06225 -12.90875 -12.33675 -11.96293 -11.76118 -11.42652 -11.06923 -10.73977 -10.60972 -9.48528 -8.26584 -6.30661 0.17079 1.15186 1.38400 1.41892 1.50960 1.73059 2.37620 2.39260 3.09873 3.59898 3.78080 4.23136 4.50825 4.57640 4.64194 4.85758 4.92344 5.01745 5.21992 5.32896 5.43141 5.48193 5.63522 6.27059 6.55866 6.78056 7.07038 7.34252 8.89255 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.051928 B = 0.008920 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.076643 B = 3138.177907 C = 3182.199856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.320 4.320 3 C 0.110 3.890 4 C -0.027 4.027 5 C -0.008 4.008 6 C -0.526 4.526 7 H 0.050 0.950 8 C 0.013 3.987 9 N -0.946 5.946 10 Si 0.937 3.063 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.249 1.249 14 O 0.001 5.999 15 N -0.541 5.541 16 H 0.472 0.528 17 C 0.479 3.521 18 O -0.580 6.580 19 H 0.081 0.919 20 H 0.064 0.936 21 H 0.079 0.921 22 H 0.116 0.884 23 H 0.099 0.901 24 H 0.022 0.978 25 H 0.026 0.974 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -10.726 -4.170 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.326 4.326 3 C 0.055 3.945 4 C -0.065 4.065 5 C -0.045 4.045 6 C -0.564 4.564 7 H 0.068 0.932 8 C -0.185 4.185 9 N -0.587 5.587 10 Si 0.762 3.238 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.173 1.173 14 O -0.013 6.013 15 N -0.233 5.233 16 H 0.328 0.672 17 C 0.279 3.721 18 O -0.466 6.466 19 H 0.100 0.900 20 H 0.083 0.917 21 H 0.097 0.903 22 H 0.134 0.866 23 H 0.117 0.883 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.049 -11.129 -4.064 12.521 hybrid contribution 0.539 -0.198 0.826 1.006 sum 4.588 -11.327 -3.238 12.643 Atomic orbital electron populations 1.19972 0.85665 1.03052 1.03123 1.21434 0.99804 0.91954 1.19363 1.24019 0.80131 0.98113 0.92286 1.20434 1.03623 0.82563 0.99854 1.19523 0.97266 0.94724 0.93015 1.21330 1.45752 0.95320 0.94025 0.93209 1.25827 0.94572 0.95208 1.02896 1.70035 1.49769 1.10611 1.28261 0.85850 0.78720 0.80067 0.79207 1.19391 1.21307 1.17268 1.83969 1.29225 1.07267 1.80795 1.43501 1.12078 0.95457 1.72277 0.67248 1.18354 0.83004 0.90217 0.80574 1.90909 1.79526 1.18356 1.57819 0.90023 0.91720 0.90253 0.86634 0.88278 0.95940 0.95538 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.10 71.24 0.72 -0.92 15 2 C -0.32 -9.84 6.32 -19.64 -0.12 -9.96 15 3 C 0.11 3.25 6.68 25.04 0.17 3.42 15 4 C -0.03 -0.85 5.50 29.85 0.16 -0.69 15 5 C -0.01 -0.31 4.02 29.85 0.12 -0.19 15 6 C -0.53 -27.23 9.66 25.60 0.25 -26.99 15 7 H 0.05 2.78 7.99 -2.91 -0.02 2.75 15 8 C 0.01 0.69 5.47 84.66 0.46 1.15 15 9 N -0.95 -56.22 13.96 21.45 0.30 -55.92 15 10 Si 0.94 41.87 27.47 68.60 1.88 43.75 15 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 12 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 13 H -0.25 -10.40 6.54 99.48 0.65 -9.75 15 14 O 0.00 0.03 11.14 75.28 0.84 0.86 15 15 N -0.54 -13.59 6.80 -179.68 -1.22 -14.82 15 16 H 0.47 8.16 8.96 -92.71 -0.83 7.33 15 17 C 0.48 15.54 8.47 85.10 0.72 16.26 15 18 O -0.58 -22.55 18.08 -5.46 -0.10 -22.65 15 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.08 2.07 7.91 -2.39 -0.02 2.05 15 22 H 0.12 3.39 7.77 -2.39 -0.02 3.37 15 23 H 0.10 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.02 0.90 7.57 -2.39 -0.02 0.89 15 25 H 0.03 1.08 7.20 -2.39 -0.02 1.07 15 26 H 0.27 14.87 8.31 -92.70 -0.77 14.10 15 Total: -1.00 -65.86 234.57 4.49 -61.37 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.31 Total: 5.31 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 2.48 Total: -17.92 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -0.92 Total: -70.74 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.74 Total: -21.78 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -65.86 4.49 -61.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259588319.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.978 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds