Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48495 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47192 * 300.00167 * 3 2 1 6 6 H 1.48499 * 109.47088 * 59.99800 * 3 2 1 7 7 C 1.40575 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00351 * 180.02562 * 7 2 1 9 9 C 1.39050 * 119.99642 * 359.97438 * 7 2 1 10 10 N 1.38406 * 127.06065 * 359.97438 * 9 7 2 11 11 H 0.96996 * 126.40184 * 0.02562 * 10 9 7 12 12 C 1.36314 * 107.19332 * 180.02562 * 10 9 7 13 13 N 1.37328 * 125.11897 * 179.97438 * 12 10 9 14 14 N 1.31641 * 109.76618 * 359.76422 * 12 10 9 15 15 C 1.34062 * 109.86263 * 0.39387 * 14 12 10 16 16 C 1.46892 * 126.34845 * 179.88433 * 15 14 12 17 17 O 1.21608 * 119.99526 * 179.68134 * 16 15 14 18 18 O 1.34907 * 120.00646 * 359.68583 * 16 15 14 19 19 H 0.96993 * 120.00173 * 0.02562 * 1 2 3 20 20 H 0.97002 * 119.99577 * 359.97438 * 13 12 10 21 21 H 0.97003 * 120.00315 * 179.97438 * 13 12 10 22 22 H 0.96700 * 114.00383 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3464 -0.0006 5 1 1.8806 2.3965 -1.2125 6 1 1.8805 2.3964 1.2125 7 6 2.0083 -1.2174 -0.0005 8 1 3.0882 -1.2174 -0.0001 9 6 1.3130 -2.4216 -0.0005 10 7 -0.0605 -2.5917 0.0004 11 1 -0.7278 -1.8877 0.0009 12 6 -0.3004 -3.9336 0.0006 13 7 -1.5451 -4.5137 0.0020 14 7 0.8408 -4.5898 -0.0053 15 6 1.8642 -3.7238 -0.0009 16 6 3.2931 -4.0646 -0.0027 17 8 4.1288 -3.1811 -0.0040 18 8 3.6783 -5.3575 -0.0030 19 1 -0.4850 0.8400 -0.0004 20 1 -2.3395 -3.9570 0.0034 21 1 -1.6299 -5.4800 0.0017 22 1 4.6373 -5.4822 -0.0038 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259649970.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = -79.154551 kcal Electronic energy + Delta-G solvation = -12199.208131 eV Core-core repulsion = 9753.219804 eV Total energy + Delta-G solvation = -2445.988327 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.89162 -40.18531 -36.60510 -36.06691 -34.68057 -32.57826 -30.43316 -27.16946 -24.20858 -21.81831 -21.00904 -19.98902 -18.71624 -18.04247 -17.36272 -16.45817 -16.27574 -16.02960 -15.40030 -15.16851 -14.46281 -13.83426 -13.60046 -13.10589 -12.90512 -12.21160 -12.03066 -11.74078 -11.16763 -10.93778 -10.42809 -10.39674 -9.08768 -8.66577 -6.42136 0.84079 1.38367 1.49689 1.55289 2.01341 2.15277 2.45023 2.77091 2.79536 3.27872 3.65305 4.60416 5.03281 5.21286 5.42722 5.68238 5.85876 6.14533 6.40747 6.48207 6.61607 6.95882 7.47009 7.57829 7.95928 7.99523 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.015669 C = 0.010471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.739098 B = 1786.510376 C = 2673.407611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 1.008 2.992 4 H -0.266 1.266 5 H -0.254 1.254 6 H -0.254 1.254 7 C -0.439 4.439 8 H 0.105 0.895 9 C 0.250 3.750 10 N -0.603 5.603 11 H 0.428 0.572 12 C 0.413 3.587 13 N -0.827 5.827 14 N -0.531 5.531 15 C -0.252 4.252 16 C 0.551 3.449 17 O -0.582 6.582 18 O -0.507 6.507 19 H 0.310 0.690 20 H 0.412 0.588 21 H 0.419 0.581 22 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 1.131 0.019 3.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.827 3.173 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.178 1.178 7 C -0.472 4.472 8 H 0.123 0.877 9 C 0.132 3.868 10 N -0.231 5.231 11 H 0.276 0.724 12 C 0.056 3.944 13 N -0.387 5.387 14 N -0.263 5.263 15 C -0.369 4.369 16 C 0.406 3.594 17 O -0.479 6.479 18 O -0.317 6.317 19 H 0.122 0.878 20 H 0.242 0.758 21 H 0.251 0.749 22 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.637 0.615 0.012 3.689 hybrid contribution 0.085 1.264 0.000 1.266 sum -3.553 1.878 0.012 4.018 Atomic orbital electron populations 1.68735 1.08969 1.32826 1.34827 1.27147 0.95860 1.05327 0.89701 0.84729 0.78794 0.74024 0.79742 1.19002 1.17818 1.17802 1.19530 0.96535 0.88768 1.42379 0.87740 1.18684 0.81703 0.93835 0.92584 1.43483 1.07375 1.06567 1.65671 0.72411 1.19467 0.88985 0.80616 1.05304 1.40204 1.00158 1.09678 1.88672 1.69619 0.96013 1.32558 1.28121 1.18889 0.89877 0.89603 1.38561 1.19290 0.87675 0.79733 0.72748 1.90711 1.53976 1.49622 1.53639 1.85085 1.31605 1.27950 1.87057 0.87790 0.75789 0.74928 0.73507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -36.63 10.76 21.94 0.24 -36.39 14 2 C 0.04 1.72 5.50 85.46 0.47 2.19 14 3 Si 1.01 35.88 29.57 68.60 2.03 37.91 14 4 H -0.27 -10.05 7.11 99.48 0.71 -9.34 14 5 H -0.25 -8.37 7.11 99.48 0.71 -7.66 14 6 H -0.25 -8.36 7.11 99.48 0.71 -7.65 14 7 C -0.44 -23.86 8.94 23.04 0.21 -23.65 14 8 H 0.10 5.97 6.12 -2.91 -0.02 5.95 14 9 C 0.25 13.96 6.77 39.08 0.26 14.22 14 10 N -0.60 -29.64 5.86 -188.49 -1.10 -30.74 14 11 H 0.43 19.55 6.42 -92.71 -0.60 18.96 14 12 C 0.41 19.22 9.31 260.62 2.43 21.64 14 13 N -0.83 -27.10 9.01 -58.68 -0.53 -27.63 14 14 N -0.53 -28.31 11.25 -184.98 -2.08 -30.39 14 15 C -0.25 -14.34 7.12 41.85 0.30 -14.05 14 16 C 0.55 29.54 8.29 70.09 0.58 30.12 14 17 O -0.58 -32.53 15.66 19.48 0.31 -32.22 14 18 O -0.51 -22.45 13.56 -58.22 -0.79 -23.24 14 19 H 0.31 11.89 8.29 -92.71 -0.77 11.12 14 20 H 0.41 10.70 8.95 -92.71 -0.83 9.87 14 21 H 0.42 11.92 8.95 -92.71 -0.83 11.09 14 22 H 0.41 12.97 8.98 -74.06 -0.67 12.31 14 Total: -1.00 -68.32 210.63 0.73 -67.60 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -1.59 Total: 44.64 kcal Atomic # 6 Polarization: 26.23 SS G_CDS: 4.25 Total: 30.47 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -3.48 Total: -125.15 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -0.48 Total: -55.47 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -68.32 0.73 -67.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649970.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.558 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds