Wall clock time and date at job start Mon Mar 30 2020 02:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34044 * 126.77567 * 2 1 4 4 N 1.20924 * 111.56811 * 179.97438 * 3 2 1 5 5 C 1.30179 * 111.60300 * 359.73693 * 4 3 2 6 6 C 1.35450 * 126.77782 * 179.97438 * 2 1 3 7 7 C 1.50696 * 128.00504 * 359.96582 * 6 2 1 8 8 H 1.08999 * 109.47358 * 324.99807 * 7 6 2 9 9 O 1.42903 * 109.47131 * 204.99447 * 7 6 2 10 10 C 1.53003 * 109.47222 * 85.00193 * 7 6 2 11 11 C 1.50698 * 109.47463 * 184.99804 * 10 7 6 12 12 H 1.08002 * 119.99528 * 359.97438 * 11 10 7 13 13 C 1.37870 * 120.00070 * 179.97438 * 11 10 7 14 14 N 1.31516 * 120.00245 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00099 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46967 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46733 * 119.99914 * 15 13 11 18 18 H 1.48497 * 109.47201 * 240.00127 * 15 13 11 19 19 H 1.09003 * 109.47491 * 270.00512 * 1 2 3 20 20 H 1.08995 * 109.47511 * 30.00250 * 1 2 3 21 21 H 1.08997 * 109.47277 * 150.01038 * 1 2 3 22 22 H 1.07999 * 126.80472 * 180.25571 * 5 4 3 23 23 H 0.96700 * 114.00311 * 300.00591 * 9 7 6 24 24 H 1.09005 * 109.46682 * 304.99605 * 10 7 6 25 25 H 1.08999 * 109.47221 * 64.99771 * 10 7 6 26 26 H 0.96998 * 120.00062 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4764 0.7565 0.0005 5 6 3.6214 -0.5372 0.0065 6 6 2.3179 -1.0849 0.0005 7 6 1.9224 -2.5390 0.0018 8 1 1.0150 -2.6682 0.5918 9 8 2.9759 -3.3187 0.5712 10 6 1.6666 -2.9993 -1.4347 11 6 1.1532 -4.4162 -1.4244 12 1 1.0229 -4.9364 -0.4869 13 6 0.8500 -5.0482 -2.6116 14 7 1.0091 -4.4148 -3.7531 15 14 0.2143 -6.8047 -2.5989 16 1 0.1258 -7.2889 -1.1978 17 1 -1.1324 -6.8482 -3.2231 18 1 1.1436 -7.6730 -3.3654 19 1 -0.3634 0.0001 1.0277 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3634 -0.8900 -0.5137 22 1 4.5528 -1.0838 0.0121 23 1 3.8157 -3.2518 0.0964 24 1 0.9258 -2.3479 -1.8984 25 1 2.5963 -2.9539 -2.0018 26 1 0.7954 -4.8593 -4.5883 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824836.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:16 Heat of formation + Delta-G solvation = -26.636992 kcal Electronic energy + Delta-G solvation = -12362.172124 eV Core-core repulsion = 10022.001472 eV Total energy + Delta-G solvation = -2340.170651 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.88893 -38.70929 -34.99974 -34.80924 -34.06649 -31.31030 -28.74155 -26.98368 -24.27954 -22.87606 -21.74506 -18.85848 -18.54326 -18.10464 -17.04381 -16.37651 -16.08455 -15.54364 -14.82420 -14.35176 -14.04151 -13.94071 -13.39960 -13.12496 -12.79478 -12.61081 -12.52763 -12.16048 -12.10206 -11.32275 -11.20990 -10.86315 -10.58471 -9.92719 -8.19383 -6.28876 0.50166 1.27327 1.41953 1.43876 1.56748 2.17969 2.43384 3.14303 3.32799 3.62147 3.73499 4.03549 4.18723 4.53269 4.66872 4.71684 4.78954 4.87589 5.01085 5.21062 5.40916 5.59142 5.78373 6.20882 6.83462 6.91089 7.25152 7.40161 8.92207 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.054792 B = 0.009167 C = 0.008746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.897287 B = 3053.834567 C = 3200.633322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.024 4.024 3 O 0.085 5.915 4 N -0.393 5.393 5 C 0.000 4.000 6 C -0.244 4.244 7 C 0.201 3.799 8 H 0.102 0.898 9 O -0.561 6.561 10 C 0.010 3.990 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.962 3.038 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.282 1.282 19 H 0.112 0.888 20 H 0.103 0.897 21 H 0.087 0.913 22 H 0.209 0.791 23 H 0.379 0.621 24 H 0.008 0.992 25 H -0.005 1.005 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 6.284 6.931 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 O 0.022 5.978 4 N -0.099 5.099 5 C -0.178 4.178 6 C -0.248 4.248 7 C 0.142 3.858 8 H 0.120 0.880 9 O -0.367 6.367 10 C -0.027 4.027 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.208 1.208 19 H 0.130 0.870 20 H 0.121 0.879 21 H 0.106 0.894 22 H 0.226 0.774 23 H 0.227 0.773 24 H 0.027 0.973 25 H 0.014 0.986 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.196 7.159 7.181 10.142 hybrid contribution 0.092 -1.429 -0.920 1.702 sum -0.105 5.730 6.261 8.488 Atomic orbital electron populations 1.20562 0.81493 1.05539 1.05632 1.24801 0.97585 0.84806 1.01529 1.84705 1.11363 1.33528 1.68168 1.73769 0.97835 1.17190 1.21144 1.25143 1.00523 0.90053 1.02088 1.22296 0.93445 0.99193 1.09903 1.20047 0.89777 0.80806 0.95210 0.88009 1.86464 1.22908 1.70505 1.56780 1.19601 0.95885 0.95722 0.91535 1.21518 1.42876 0.99250 0.92818 0.92128 1.25879 0.95999 1.02419 0.95203 1.70093 1.50097 1.39085 0.98134 0.85438 0.77899 0.79492 0.78457 1.18758 1.20359 1.20775 0.86995 0.87852 0.89447 0.77418 0.77273 0.97322 0.98632 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.30 71.24 0.73 -0.99 15 2 C -0.02 -0.74 7.49 25.04 0.19 -0.55 15 3 O 0.09 2.77 11.20 71.60 0.80 3.57 15 4 N -0.39 -13.47 12.07 -59.25 -0.72 -14.19 15 5 C 0.00 0.00 11.56 85.71 0.99 0.99 15 6 C -0.24 -8.55 5.41 -19.74 -0.11 -8.65 15 7 C 0.20 7.95 3.18 29.85 0.10 8.04 15 8 H 0.10 3.93 8.14 -2.39 -0.02 3.91 15 9 O -0.56 -21.60 12.93 -148.98 -1.93 -23.53 15 10 C 0.01 0.49 4.64 29.85 0.14 0.62 15 11 C -0.53 -28.67 8.88 25.60 0.23 -28.44 15 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 15 13 C 0.00 0.15 5.46 84.65 0.46 0.61 15 14 N -0.93 -55.06 13.29 21.45 0.28 -54.77 15 15 Si 0.96 43.32 29.54 68.60 2.03 45.34 15 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 17 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 19 H 0.11 1.98 8.14 -2.39 -0.02 1.96 15 20 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.09 2.28 8.01 -2.39 -0.02 2.26 15 22 H 0.21 5.53 7.78 -2.91 -0.02 5.50 15 23 H 0.38 12.24 8.42 -74.06 -0.62 11.62 15 24 H 0.01 0.45 8.10 -2.38 -0.02 0.43 15 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 15 Total: -1.00 -65.31 238.19 3.76 -61.55 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.57 Total: 10.39 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 2.73 Total: -28.36 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.43 Total: -68.96 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -1.12 Total: -19.96 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.31 3.76 -61.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824836.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.912 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds