Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.72048 * 127.24741 * 2 1 4 4 N 1.69605 * 95.70385 * 179.91087 * 3 2 1 5 5 C 1.30083 * 107.14962 * 0.35676 * 4 3 2 6 6 C 1.50708 * 121.56254 * 179.75546 * 5 4 3 7 7 C 1.50694 * 109.47104 * 269.97996 * 6 5 4 8 8 H 1.08003 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00122 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99989 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47280 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46638 * 120.00020 * 11 9 7 14 14 H 1.48495 * 109.47008 * 239.99488 * 11 9 7 15 15 C 1.35143 * 127.24692 * 180.31741 * 2 1 3 16 16 C 1.50699 * 122.62001 * 0.02562 * 15 2 1 17 17 H 1.09002 * 109.47152 * 269.68330 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.68430 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.68411 * 1 2 3 20 20 H 1.09000 * 109.46926 * 29.97617 * 6 5 4 21 21 H 1.08994 * 109.46924 * 149.97449 * 6 5 4 22 22 H 0.96998 * 120.00280 * 179.97438 * 10 9 7 23 23 H 1.08993 * 109.47092 * 89.97365 * 16 15 2 24 24 H 1.08999 * 109.47053 * 209.97620 * 16 15 2 25 25 H 1.08996 * 109.46884 * 329.97324 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5484 1.3696 0.0000 4 7 3.9938 0.4823 0.0026 5 6 3.6705 -0.7777 -0.0043 6 6 4.7182 -1.8610 -0.0098 7 6 5.0676 -2.2147 -1.4324 8 1 4.5794 -1.7062 -2.2507 9 6 6.0104 -3.1874 -1.6893 10 7 6.6052 -3.8061 -0.6929 11 14 6.4429 -3.6263 -3.4528 12 1 5.6388 -2.7925 -4.3819 13 1 7.8879 -3.3745 -3.6853 14 1 6.1457 -5.0612 -3.6929 15 6 2.3250 -1.0758 -0.0060 16 6 1.8063 -2.4907 -0.0144 17 1 -0.3633 -0.0057 1.0277 18 1 -0.3633 -0.8872 -0.5187 19 1 -0.3633 0.8928 -0.5089 20 1 5.6105 -1.5060 0.5059 21 1 4.3311 -2.7434 0.4995 22 1 7.2682 -4.4907 -0.8735 23 1 1.6811 -2.8256 -1.0440 24 1 2.5168 -3.1411 0.4956 25 1 0.8457 -2.5285 0.4993 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259835792.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = 16.028511 kcal Electronic energy + Delta-G solvation = -10273.111705 eV Core-core repulsion = 8377.544040 eV Total energy + Delta-G solvation = -1895.567665 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.75948 -33.46297 -32.64483 -29.87920 -28.34662 -25.47411 -23.85322 -20.52982 -17.86089 -17.31943 -16.42178 -14.67971 -14.27258 -13.94877 -13.09331 -12.79673 -12.77055 -12.28757 -11.99822 -11.71936 -11.51885 -11.18960 -10.77937 -10.63328 -10.35486 -10.14788 -9.50158 -9.37698 -8.56749 -8.46859 -7.72966 -6.09698 -4.12870 1.37261 2.14559 2.64710 3.25806 3.28070 3.36316 3.42670 4.41785 5.04076 5.26305 5.34522 5.59557 5.61663 5.85194 5.94994 6.11221 6.21307 6.52370 6.59114 6.86163 7.10781 7.45561 7.84911 7.85572 8.20365 8.89326 9.50300 11.00817 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050515 B = 0.010160 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.159279 B = 2755.130036 C = 2893.789697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.189 4.189 3 S 0.155 5.845 4 N -0.455 5.455 5 C 0.162 3.838 6 C 0.080 3.920 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.282 1.282 15 C -0.152 4.152 16 C -0.081 4.081 17 H 0.074 0.926 18 H 0.076 0.924 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.047 0.953 22 H 0.263 0.737 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 4.067 1.415 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.318 4.318 3 S 0.310 5.690 4 N -0.273 5.273 5 C -0.016 4.016 6 C 0.038 3.962 7 C -0.547 4.547 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.170 4.170 16 C -0.140 4.140 17 H 0.092 0.908 18 H 0.094 0.906 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.154 6.072 1.470 11.922 hybrid contribution -0.184 -1.936 -0.994 2.184 sum -10.338 4.135 0.476 11.145 Atomic orbital electron populations 1.20165 0.87244 1.02971 1.02468 1.24989 1.01036 0.98105 1.07691 1.83644 0.96508 1.16421 1.72385 1.77016 1.15604 1.07730 1.26911 1.22292 0.95244 0.93054 0.91059 1.18246 0.90559 0.88559 0.98791 1.20905 1.22635 1.20342 0.90846 0.92512 1.24948 0.95708 0.95911 0.97469 1.69951 1.27007 1.25384 1.30765 0.86432 0.78361 0.78171 0.84491 1.19715 1.20835 1.20815 1.20017 0.92203 0.97767 1.06973 1.20403 1.00031 0.91006 1.02560 0.90778 0.90563 0.91316 0.94245 0.93545 0.92722 0.91039 0.90294 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 9.89 36.01 0.36 -0.48 15 2 C -0.19 -3.22 6.58 -35.41 -0.23 -3.45 15 3 S 0.16 2.86 23.72 -107.50 -2.55 0.31 15 4 N -0.45 -10.62 12.05 32.03 0.39 -10.23 15 5 C 0.16 3.77 5.91 -83.49 -0.49 3.27 15 6 C 0.08 2.09 5.03 -29.03 -0.15 1.95 15 7 C -0.51 -14.27 9.09 -34.44 -0.31 -14.59 15 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 15 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 10 N -0.89 -25.96 13.29 55.43 0.74 -25.22 15 11 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 15 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 15 C -0.15 -2.99 5.83 -105.88 -0.62 -3.61 15 16 C -0.08 -1.36 9.39 36.01 0.34 -1.02 15 17 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 18 H 0.08 0.83 7.58 -51.93 -0.39 0.44 15 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.04 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.05 1.20 6.36 -51.93 -0.33 0.87 15 22 H 0.26 7.19 8.31 -40.82 -0.34 6.86 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.08 1.42 6.38 -51.93 -0.33 1.09 15 25 H 0.05 0.75 7.48 -51.93 -0.39 0.36 15 LS Contribution 233.51 15.07 3.52 3.52 Total: -1.00 -30.30 233.51 -6.81 -37.11 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: -2.68 Total: -5.67 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -1.21 Total: -16.29 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 1.12 Total: -35.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.55 Total: 0.31 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -30.30 -6.81 -37.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835792.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.139 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds