Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.72048 * 127.24741 * 2 1 4 4 N 1.69605 * 95.70385 * 179.91087 * 3 2 1 5 5 C 1.30083 * 107.14962 * 0.35676 * 4 3 2 6 6 C 1.50708 * 121.56254 * 179.75546 * 5 4 3 7 7 C 1.50694 * 109.47104 * 269.97996 * 6 5 4 8 8 H 1.08003 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00122 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99989 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47280 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46638 * 120.00020 * 11 9 7 14 14 H 1.48495 * 109.47008 * 239.99488 * 11 9 7 15 15 C 1.35143 * 127.24692 * 180.31741 * 2 1 3 16 16 C 1.50699 * 122.62001 * 0.02562 * 15 2 1 17 17 H 1.09002 * 109.47152 * 269.68330 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.68430 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.68411 * 1 2 3 20 20 H 1.09000 * 109.46926 * 29.97617 * 6 5 4 21 21 H 1.08994 * 109.46924 * 149.97449 * 6 5 4 22 22 H 0.96998 * 120.00280 * 179.97438 * 10 9 7 23 23 H 1.08993 * 109.47092 * 89.97365 * 16 15 2 24 24 H 1.08999 * 109.47053 * 209.97620 * 16 15 2 25 25 H 1.08996 * 109.46884 * 329.97324 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5484 1.3696 0.0000 4 7 3.9938 0.4823 0.0026 5 6 3.6705 -0.7777 -0.0043 6 6 4.7182 -1.8610 -0.0098 7 6 5.0676 -2.2147 -1.4324 8 1 4.5794 -1.7062 -2.2507 9 6 6.0104 -3.1874 -1.6893 10 7 6.6052 -3.8061 -0.6929 11 14 6.4429 -3.6263 -3.4528 12 1 5.6388 -2.7925 -4.3819 13 1 7.8879 -3.3745 -3.6853 14 1 6.1457 -5.0612 -3.6929 15 6 2.3250 -1.0758 -0.0060 16 6 1.8063 -2.4907 -0.0144 17 1 -0.3633 -0.0057 1.0277 18 1 -0.3633 -0.8872 -0.5187 19 1 -0.3633 0.8928 -0.5089 20 1 5.6105 -1.5060 0.5059 21 1 4.3311 -2.7434 0.4995 22 1 7.2682 -4.4907 -0.8735 23 1 1.6811 -2.8256 -1.0440 24 1 2.5168 -3.1411 0.4956 25 1 0.8457 -2.5285 0.4993 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259835792.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = -2.859005 kcal Electronic energy + Delta-G solvation = -10273.930729 eV Core-core repulsion = 8377.544040 eV Total energy + Delta-G solvation = -1896.386689 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.34139 -35.33736 -34.32030 -31.52033 -29.98955 -26.80484 -25.89561 -22.17086 -19.43487 -18.81164 -18.58740 -16.64555 -15.74877 -15.41998 -14.64808 -14.38176 -14.11779 -13.66638 -13.48616 -13.26368 -13.18957 -12.80479 -12.65181 -12.49918 -12.08194 -11.76464 -11.54608 -11.07869 -10.63229 -10.05308 -9.27046 -8.24506 -6.36857 -0.12541 0.71235 1.03223 1.38582 1.39863 1.52191 1.64893 2.40173 3.07955 3.74575 4.12349 4.29401 4.53511 4.76539 4.78722 4.85538 4.91506 5.08756 5.15860 5.18217 5.24965 5.53219 5.67371 6.06906 6.07199 6.70576 7.30630 8.86190 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050515 B = 0.010160 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.159279 B = 2755.130036 C = 2893.789697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.158 4.158 3 S 0.198 5.802 4 N -0.513 5.513 5 C 0.142 3.858 6 C 0.089 3.911 7 C -0.524 4.524 8 H 0.047 0.953 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.967 3.033 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.268 1.268 15 C -0.187 4.187 16 C -0.074 4.074 17 H 0.101 0.899 18 H 0.094 0.906 19 H 0.090 0.910 20 H 0.001 0.999 21 H 0.040 0.960 22 H 0.268 0.732 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 4.378 0.559 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.288 4.288 3 S 0.353 5.647 4 N -0.333 5.333 5 C -0.035 4.035 6 C 0.048 3.952 7 C -0.563 4.563 8 H 0.065 0.935 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.791 3.209 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.193 1.193 15 C -0.203 4.203 16 C -0.133 4.133 17 H 0.119 0.881 18 H 0.113 0.887 19 H 0.109 0.891 20 H 0.019 0.981 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.493 6.367 0.621 14.036 hybrid contribution 0.456 -1.901 -0.671 2.067 sum -12.037 4.466 -0.051 12.839 Atomic orbital electron populations 1.20472 0.82955 1.04976 1.04719 1.25671 1.03391 0.96153 1.03592 1.83363 0.94542 1.15547 1.71276 1.76713 1.19814 1.08396 1.28380 1.22078 0.96255 0.92424 0.92721 1.17914 0.90219 0.89570 0.97525 1.21094 1.23133 1.20660 0.91459 0.93473 1.25821 0.95337 0.95583 1.01912 1.70056 1.27464 1.25856 1.33017 0.85370 0.78016 0.78463 0.79031 1.19414 1.20396 1.19268 1.20132 0.90959 0.99892 1.09289 1.20387 1.01233 0.88999 1.02687 0.88103 0.88732 0.89130 0.98091 0.94221 0.92263 0.91249 0.92481 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.89 71.24 0.70 -0.66 15 2 C -0.16 -4.92 6.58 24.97 0.16 -4.76 15 3 S 0.20 6.95 23.72 -56.49 -1.34 5.61 15 4 N -0.51 -24.46 12.05 -52.58 -0.63 -25.10 15 5 C 0.14 6.79 5.91 42.72 0.25 7.05 15 6 C 0.09 4.92 5.03 29.10 0.15 5.06 15 7 C -0.52 -30.44 9.09 25.60 0.23 -30.20 15 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 15 9 C 0.01 0.72 5.46 84.66 0.46 1.18 15 10 N -0.92 -55.07 13.29 21.45 0.28 -54.79 15 11 Si 0.97 44.38 29.54 68.60 2.03 46.41 15 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 15 C -0.19 -7.16 5.83 -20.68 -0.12 -7.28 15 16 C -0.07 -2.40 9.39 71.24 0.67 -1.73 15 17 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 18 H 0.09 1.54 7.58 -2.39 -0.02 1.53 15 19 H 0.09 1.39 8.14 -2.38 -0.02 1.37 15 20 H 0.00 0.05 8.14 -2.39 -0.02 0.03 15 21 H 0.04 2.18 6.36 -2.39 -0.02 2.16 15 22 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 23 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.06 2.08 6.38 -2.39 -0.02 2.06 15 25 H 0.09 2.25 7.48 -2.39 -0.02 2.24 15 Total: -1.00 -67.48 233.51 4.03 -63.45 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: 1.18 Total: -4.24 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 2.51 Total: -31.34 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -0.35 Total: -79.88 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.34 Total: 5.61 kcal Total: -67.48 4.03 -63.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835792.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.586 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds