Wall clock time and date at job start Mon Mar 30 2020 02:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34476 * 126.16429 * 2 1 4 4 C 1.30257 * 108.69629 * 179.97438 * 3 2 1 5 5 O 1.33969 * 108.76455 * 359.73286 * 4 3 2 6 6 C 1.34323 * 126.16403 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.44621 * 0.02562 * 6 2 1 8 8 H 1.09009 * 109.47161 * 345.00124 * 7 6 2 9 9 O 1.42894 * 109.47463 * 225.00470 * 7 6 2 10 10 C 1.52996 * 109.47144 * 104.99848 * 7 6 2 11 11 C 1.50702 * 109.47159 * 185.00130 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.09003 * 109.47257 * 270.00592 * 1 2 3 20 20 H 1.09005 * 109.46942 * 30.00408 * 1 2 3 21 21 H 1.08994 * 109.47145 * 150.00496 * 1 2 3 22 22 H 1.07998 * 125.61723 * 180.02562 * 4 3 2 23 23 H 0.96703 * 113.99928 * 299.99365 * 9 7 6 24 24 H 1.09004 * 109.47066 * 65.00333 * 10 7 6 25 25 H 1.08994 * 109.47405 * 305.00163 * 10 7 6 26 26 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0006 5 8 3.5734 -0.6447 0.0068 6 6 2.2997 -1.0844 0.0005 7 6 1.8493 -2.5226 0.0006 8 1 0.7932 -2.5726 0.2662 9 8 2.6155 -3.2617 0.9537 10 6 2.0536 -3.1211 -1.3926 11 6 1.4910 -4.5187 -1.4263 12 1 1.0331 -4.9380 -0.5426 13 6 1.5553 -5.2599 -2.5872 14 7 2.1125 -4.7491 -3.6634 15 14 0.8510 -6.9895 -2.6312 16 1 -0.5994 -6.9415 -2.3161 17 1 1.0451 -7.5686 -3.9848 18 1 1.5480 -7.8335 -1.6277 19 1 -0.3634 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5137 22 1 4.4066 1.3433 0.0011 23 1 3.5667 -3.2607 0.7794 24 1 3.1188 -3.1525 -1.6218 25 1 1.5410 -2.5052 -2.1314 26 1 2.1580 -5.2707 -4.4800 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853122.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:28 Heat of formation + Delta-G solvation = -42.507091 kcal Electronic energy + Delta-G solvation = -12348.171703 eV Core-core repulsion = 10007.312873 eV Total energy + Delta-G solvation = -2340.858830 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.97313 -36.79236 -34.81961 -32.96775 -31.64539 -29.41156 -27.14641 -24.74941 -22.38129 -21.18099 -20.31886 -17.40116 -16.42295 -16.11128 -15.61253 -14.92390 -14.54466 -13.72815 -13.52603 -12.98689 -12.60048 -12.33112 -11.92972 -11.27428 -11.03688 -10.91564 -10.68848 -10.60328 -10.40062 -10.20045 -9.29413 -9.24266 -8.46747 -8.17030 -6.08746 -4.12119 1.84332 2.97552 3.13897 3.31186 3.35317 3.38678 4.39332 4.44537 5.05222 5.19979 5.24806 5.31315 5.67675 5.84871 5.95027 6.09116 6.27270 6.38650 6.45423 6.68073 7.37839 7.46544 7.87103 8.01226 8.19573 8.29839 8.93640 9.52287 11.02505 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.054425 B = 0.009042 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.349007 B = 3095.810076 C = 3141.170543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.030 4.030 3 N -0.487 5.487 4 C 0.149 3.851 5 O -0.200 6.200 6 C -0.046 4.046 7 C 0.193 3.807 8 H 0.120 0.880 9 O -0.550 6.550 10 C -0.001 4.001 11 C -0.517 4.517 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.275 1.275 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.244 0.756 23 H 0.373 0.627 24 H 0.024 0.976 25 H 0.029 0.971 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 7.297 6.024 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.149 4.149 3 N -0.216 5.216 4 C -0.078 4.078 5 O -0.086 6.086 6 C -0.099 4.099 7 C 0.133 3.867 8 H 0.138 0.862 9 O -0.354 6.354 10 C -0.038 4.038 11 C -0.555 4.555 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 H 0.089 0.911 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.260 0.740 23 H 0.220 0.780 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.063 7.747 6.096 9.858 hybrid contribution 0.635 -1.211 -0.525 1.464 sum 0.698 6.536 5.570 8.616 Atomic orbital electron populations 1.20112 0.86706 1.03498 1.02464 1.21438 0.97968 0.87461 1.08021 1.70239 1.01478 1.32004 1.17925 1.27835 0.97388 0.79831 1.02704 1.84414 1.30475 1.24290 1.69376 1.25056 0.80537 1.00178 1.04174 1.21006 0.94967 0.77417 0.93286 0.86233 1.86495 1.22574 1.74335 1.52045 1.19803 0.98445 0.96538 0.89038 1.21034 1.38741 0.98518 0.97244 0.91866 1.25021 0.95310 0.98547 0.95516 1.69963 1.44155 1.37605 1.01728 0.86553 0.79640 0.84175 0.77040 1.20096 1.21324 1.20088 0.91146 0.90976 0.90159 0.73996 0.78011 0.95770 0.95243 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 9.99 36.01 0.36 -0.69 15 2 C -0.03 -0.54 7.11 -82.81 -0.59 -1.13 15 3 N -0.49 -8.50 11.29 -11.18 -0.13 -8.62 15 4 C 0.15 2.23 13.23 52.09 0.69 2.92 15 5 O -0.20 -3.57 10.78 5.30 0.06 -3.51 15 6 C -0.05 -0.88 6.24 -35.69 -0.22 -1.10 15 7 C 0.19 3.99 3.23 -27.88 -0.09 3.90 15 8 H 0.12 2.37 7.17 -51.92 -0.37 2.00 15 9 O -0.55 -11.23 13.08 -35.29 -0.46 -11.69 15 10 C 0.00 -0.03 4.64 -27.88 -0.13 -0.16 15 11 C -0.52 -14.22 8.88 -34.44 -0.31 -14.53 15 12 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 15 15 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 19 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 20 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.08 1.18 7.44 -51.93 -0.39 0.80 15 22 H 0.24 2.22 8.06 -52.49 -0.42 1.79 15 23 H 0.37 6.63 9.04 45.56 0.41 7.04 15 24 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 238.39 15.07 3.59 3.59 Total: -1.00 -32.09 238.39 -3.61 -35.70 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.00 Total: 3.14 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.38 Total: -9.26 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.61 Total: -34.31 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.40 Total: -15.20 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.09 -3.61 -35.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853122.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds