Wall clock time and date at job start Mon Mar 30 2020 02:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34473 * 126.16749 * 2 1 4 4 C 1.30254 * 108.70205 * 180.26532 * 3 2 1 5 5 O 1.33963 * 108.76011 * 0.02562 * 4 3 2 6 6 C 1.34334 * 126.16435 * 180.31318 * 2 1 3 7 7 C 1.50700 * 126.44351 * 359.71398 * 6 2 1 8 8 H 1.09007 * 109.47111 * 15.00074 * 7 6 2 9 9 O 1.42901 * 109.47007 * 134.99993 * 7 6 2 10 10 C 1.52998 * 109.47050 * 255.00318 * 7 6 2 11 11 C 1.50699 * 109.47230 * 175.00382 * 10 7 6 12 12 H 1.08004 * 119.99736 * 359.97438 * 11 10 7 13 13 C 1.37873 * 120.00158 * 179.97438 * 11 10 7 14 14 N 1.31521 * 120.00310 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99934 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47355 * 90.00506 * 15 13 11 17 17 H 1.48500 * 109.47051 * 210.00121 * 15 13 11 18 18 H 1.48496 * 109.47334 * 330.00219 * 15 13 11 19 19 H 1.09005 * 109.46824 * 269.68791 * 1 2 3 20 20 H 1.08994 * 109.47321 * 29.68888 * 1 2 3 21 21 H 1.09001 * 109.47319 * 149.69484 * 1 2 3 22 22 H 1.08004 * 125.61569 * 179.97438 * 4 3 2 23 23 H 0.96700 * 114.00034 * 60.00150 * 9 7 6 24 24 H 1.09007 * 109.46896 * 295.00116 * 10 7 6 25 25 H 1.08998 * 109.47460 * 54.99691 * 10 7 6 26 26 H 0.96993 * 120.00361 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0057 5 8 3.5734 -0.6446 -0.0101 6 6 2.2998 -1.0845 -0.0059 7 6 1.8493 -2.5226 -0.0077 8 1 0.7923 -2.5720 -0.2696 9 8 2.6122 -3.2595 -0.9654 10 6 2.0587 -3.1244 1.3833 11 6 1.4963 -4.5221 1.4158 12 1 1.0352 -4.9393 0.5327 13 6 1.5704 -5.2682 2.5728 14 7 1.0791 -6.4879 2.6014 15 14 2.3685 -4.5468 4.0999 16 1 1.3408 -3.8471 4.9120 17 1 2.9757 -5.6380 4.9035 18 1 3.4234 -3.5819 3.6983 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3633 0.8927 -0.5090 21 1 -0.3634 -0.8872 -0.5186 22 1 4.4066 1.3434 -0.0076 23 1 3.5640 -3.2588 -0.7945 24 1 3.1247 -3.1563 1.6086 25 1 1.5488 -2.5101 2.1254 26 1 1.1309 -7.0127 3.4155 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853124.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:30 Heat of formation + Delta-G solvation = -38.004970 kcal Electronic energy + Delta-G solvation = -12400.547432 eV Core-core repulsion = 10059.883828 eV Total energy + Delta-G solvation = -2340.663604 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.09830 -36.92582 -34.93833 -32.91427 -31.77481 -29.88379 -27.38274 -24.87402 -22.25208 -21.13929 -20.39880 -17.54801 -16.63296 -16.35507 -15.83751 -15.08251 -14.17777 -13.96370 -13.77084 -13.07599 -12.72413 -12.50402 -12.04170 -11.60708 -11.25388 -11.01361 -10.79367 -10.57614 -10.47367 -9.89947 -9.46593 -9.32082 -8.63325 -8.33065 -6.11791 -4.11404 1.71632 2.86540 3.01545 3.24020 3.32353 3.34471 4.32373 4.36868 4.92967 5.06290 5.13773 5.24099 5.52551 5.79920 5.85108 6.00013 6.10253 6.21472 6.29696 6.57088 6.86079 7.07390 7.60615 7.89830 8.16848 8.42586 8.95064 9.48349 11.01102 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.010484 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.592954 B = 2670.117679 C = 2761.261983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 N -0.486 5.486 4 C 0.151 3.849 5 O -0.201 6.201 6 C -0.053 4.053 7 C 0.204 3.796 8 H 0.126 0.874 9 O -0.545 6.545 10 C -0.038 4.038 11 C -0.517 4.517 12 H 0.081 0.919 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.268 1.268 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.245 0.755 23 H 0.373 0.627 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 11.914 -3.573 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 N -0.216 5.216 4 C -0.075 4.075 5 O -0.086 6.086 6 C -0.107 4.107 7 C 0.144 3.856 8 H 0.143 0.857 9 O -0.349 6.349 10 C -0.075 4.075 11 C -0.555 4.555 12 H 0.099 0.901 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.193 1.193 19 H 0.094 0.906 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.261 0.739 23 H 0.220 0.780 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.635 12.237 -3.713 13.057 hybrid contribution 1.357 -0.042 1.271 1.860 sum 3.992 12.195 -2.442 13.062 Atomic orbital electron populations 1.20129 0.86538 1.03108 1.03029 1.21480 0.98047 0.87416 1.07523 1.70258 1.01466 1.31962 1.17936 1.27875 0.97428 0.79782 1.02431 1.84410 1.30450 1.24345 1.69445 1.25059 0.80599 1.00190 1.04856 1.20743 0.95514 0.77222 0.92082 0.85691 1.86549 1.22529 1.74330 1.51460 1.20289 0.97955 0.97891 0.91394 1.20920 1.38729 0.96297 0.99506 0.90102 1.24965 0.94909 0.94688 0.98543 1.69894 1.45836 1.09542 1.28274 0.86857 0.80294 0.79053 0.83540 1.20150 1.21123 1.19268 0.90642 0.91012 0.90391 0.73904 0.78028 0.95838 0.95735 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.17 36.01 0.37 -0.63 15 2 C -0.03 -0.44 7.11 -82.81 -0.59 -1.02 15 3 N -0.49 -8.03 11.29 -11.18 -0.13 -8.15 15 4 C 0.15 2.11 13.23 52.09 0.69 2.80 15 5 O -0.20 -3.35 10.77 5.35 0.06 -3.29 15 6 C -0.05 -0.97 6.24 -35.69 -0.22 -1.19 15 7 C 0.20 4.05 3.31 -27.88 -0.09 3.96 15 8 H 0.13 2.41 6.84 -51.93 -0.36 2.05 15 9 O -0.54 -10.89 13.08 -35.27 -0.46 -11.35 15 10 C -0.04 -0.88 3.71 -27.88 -0.10 -0.98 15 11 C -0.52 -14.33 9.43 -34.44 -0.32 -14.66 15 12 H 0.08 2.44 7.99 -52.48 -0.42 2.02 15 13 C 0.07 2.02 5.47 -17.82 -0.10 1.93 15 14 N -0.90 -27.20 13.96 55.43 0.77 -26.42 15 15 Si 0.88 21.34 27.47 -169.99 -4.67 16.68 15 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 18 H -0.27 -6.34 6.54 56.52 0.37 -5.97 15 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 20 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 21 H 0.08 1.02 7.03 -51.93 -0.37 0.66 15 22 H 0.25 1.99 8.06 -52.48 -0.42 1.57 15 23 H 0.37 6.34 9.04 45.56 0.41 6.75 15 24 H 0.02 0.55 7.20 -51.93 -0.37 0.18 15 25 H 0.02 0.57 7.57 -51.93 -0.39 0.17 15 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 LS Contribution 234.31 15.07 3.53 3.53 Total: -1.00 -32.65 234.31 -3.20 -35.85 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -1.93 Total: 2.95 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.37 Total: -9.79 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.65 Total: -34.58 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.40 Total: -14.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.65 -3.20 -35.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853124.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.153 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds