Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34046 * 126.77715 * 2 1 4 4 N 1.20912 * 111.56744 * 179.97438 * 3 2 1 5 5 C 1.30177 * 111.60813 * 359.74599 * 4 3 2 6 6 C 1.35445 * 126.77788 * 180.02562 * 2 1 3 7 7 C 1.50696 * 128.00472 * 359.96159 * 6 2 1 8 8 C 1.52999 * 109.47523 * 300.00210 * 7 6 2 9 9 O 1.42903 * 109.47131 * 179.97438 * 7 6 2 10 10 C 1.50707 * 109.47163 * 60.00598 * 7 6 2 11 11 H 1.07995 * 119.99310 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99931 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00169 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99871 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46975 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46997 * 119.99957 * 14 12 10 17 17 H 1.48498 * 109.47461 * 240.00253 * 14 12 10 18 18 H 1.08996 * 109.47341 * 270.00053 * 1 2 3 19 19 H 1.09003 * 109.46880 * 29.99890 * 1 2 3 20 20 H 1.08997 * 109.47007 * 149.99631 * 1 2 3 21 21 H 1.07993 * 126.80558 * 180.25647 * 5 4 3 22 22 H 1.08997 * 109.46848 * 300.00003 * 8 7 6 23 23 H 1.08997 * 109.46819 * 59.99987 * 8 7 6 24 24 H 1.08997 * 109.47286 * 180.02562 * 8 7 6 25 25 H 0.96700 * 114.00311 * 300.00591 * 9 7 6 26 26 H 0.96998 * 119.99752 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5372 0.0063 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5390 -0.0003 8 6 1.0932 -2.8419 1.2493 9 8 3.0974 -3.3523 -0.0016 10 6 1.1044 -2.8372 -1.2305 11 1 0.8920 -2.0521 -1.9410 12 6 0.6275 -4.1123 -1.4487 13 7 0.8866 -5.0684 -0.5837 14 14 -0.3870 -4.4818 -2.9732 15 1 -0.5349 -3.2446 -3.7812 16 1 0.2969 -5.5222 -3.7826 17 1 -1.7288 -4.9723 -2.5681 18 1 -0.3634 0.0000 1.0276 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 4.5527 -1.0838 0.0119 22 1 1.6848 -2.6263 2.1389 23 1 0.1969 -2.2216 1.2497 24 1 0.8075 -3.8938 1.2496 25 1 3.6715 -3.2128 -0.7671 26 1 0.5507 -5.9653 -0.7371 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872905.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = 5.527334 kcal Electronic energy + Delta-G solvation = -12904.747827 eV Core-core repulsion = 10565.971925 eV Total energy + Delta-G solvation = -2338.775902 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.15050 -36.72701 -32.92667 -32.65289 -32.13615 -28.94935 -27.04660 -25.32821 -22.89460 -21.14585 -19.36979 -17.22022 -16.79953 -16.36150 -14.90527 -14.65001 -13.70047 -13.30897 -12.95875 -12.64551 -12.20714 -11.77350 -11.41055 -11.16159 -11.11465 -10.87686 -10.54322 -10.42812 -10.15399 -9.63652 -9.28700 -8.66884 -8.57110 -8.00847 -6.08369 -4.29572 2.21254 3.09086 3.20348 3.30102 3.33491 3.86775 4.30918 5.05381 5.13587 5.41255 5.70235 5.94514 6.00385 6.10145 6.26657 6.45748 6.67260 6.76998 6.93447 6.98925 7.45285 7.66768 7.90098 8.13743 8.70816 8.94438 9.24194 9.47405 10.91132 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.013540 C = 0.012251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.434757 B = 2067.481621 C = 2285.026175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.049 4.049 3 O 0.078 5.922 4 N -0.388 5.388 5 C -0.011 4.011 6 C -0.182 4.182 7 C 0.318 3.682 8 C -0.121 4.121 9 O -0.556 6.556 10 C -0.557 4.557 11 H 0.059 0.941 12 C 0.083 3.917 13 N -0.854 5.854 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.282 1.282 18 H 0.075 0.925 19 H 0.067 0.933 20 H 0.110 0.890 21 H 0.182 0.818 22 H 0.015 0.985 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.350 0.650 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 5.415 0.543 5.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 O 0.013 5.987 4 N -0.094 5.094 5 C -0.188 4.188 6 C -0.186 4.186 7 C 0.277 3.723 8 C -0.178 4.178 9 O -0.359 6.359 10 C -0.594 4.594 11 H 0.077 0.923 12 C -0.124 4.124 13 N -0.489 5.489 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.207 1.207 18 H 0.093 0.907 19 H 0.085 0.915 20 H 0.128 0.872 21 H 0.199 0.801 22 H 0.034 0.966 23 H 0.063 0.937 24 H 0.112 0.888 25 H 0.193 0.807 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.650 6.041 1.167 6.187 hybrid contribution -0.463 -0.804 -1.403 1.682 sum -1.113 5.237 -0.236 5.359 Atomic orbital electron populations 1.20397 0.84486 1.04715 1.03104 1.24073 0.95986 0.85323 1.05787 1.84646 1.11487 1.33902 1.68693 1.73725 0.97641 1.17160 1.20857 1.24820 1.00295 0.89984 1.03748 1.22797 0.91169 1.00844 1.03764 1.17116 0.83267 0.76859 0.95011 1.21641 0.97252 1.04853 0.94090 1.86522 1.36015 1.66188 1.47155 1.21501 1.35262 0.95589 1.07070 0.92320 1.24988 0.95052 0.96147 0.96181 1.70005 1.42933 1.01569 1.34441 0.86602 0.80040 0.78533 0.83208 1.19657 1.20854 1.20749 0.90657 0.91451 0.87171 0.80055 0.96599 0.93686 0.88761 0.80653 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 8.94 36.01 0.32 -0.80 15 2 C -0.05 -0.96 7.34 -35.31 -0.26 -1.22 15 3 O 0.08 1.54 11.20 17.16 0.19 1.73 15 4 N -0.39 -7.89 12.07 30.35 0.37 -7.53 15 5 C -0.01 -0.22 11.49 -17.06 -0.20 -0.42 15 6 C -0.18 -3.93 4.84 -104.42 -0.51 -4.43 15 7 C 0.32 7.60 0.79 -92.92 -0.07 7.52 15 8 C -0.12 -2.84 8.50 37.16 0.32 -2.52 15 9 O -0.56 -13.70 12.01 -35.23 -0.42 -14.12 15 10 C -0.56 -14.11 6.76 -34.44 -0.23 -14.34 15 11 H 0.06 1.50 7.46 -52.49 -0.39 1.10 15 12 C 0.08 2.13 5.24 -17.82 -0.09 2.04 15 13 N -0.85 -23.13 10.87 55.43 0.60 -22.52 15 14 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 15 15 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 18 H 0.07 1.07 8.03 -51.93 -0.42 0.66 15 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.11 1.97 6.25 -51.93 -0.32 1.65 15 21 H 0.18 3.21 8.06 -52.49 -0.42 2.78 15 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 23 H 0.04 0.95 6.47 -51.93 -0.34 0.62 15 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 15 25 H 0.35 7.66 8.86 45.56 0.40 8.06 15 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 15 LS Contribution 226.70 15.07 3.42 3.42 Total: -1.00 -28.62 226.70 -3.37 -32.00 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -1.78 Total: 6.28 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.72 Total: -14.17 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.97 Total: -30.05 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.23 Total: -12.39 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.62 -3.37 -32.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872905.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.523 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds