Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34046 * 126.77715 * 2 1 4 4 N 1.20912 * 111.56744 * 179.97438 * 3 2 1 5 5 C 1.30177 * 111.60813 * 359.74599 * 4 3 2 6 6 C 1.35445 * 126.77788 * 180.02562 * 2 1 3 7 7 C 1.50696 * 128.00472 * 359.96159 * 6 2 1 8 8 C 1.52999 * 109.47523 * 300.00210 * 7 6 2 9 9 O 1.42903 * 109.47131 * 179.97438 * 7 6 2 10 10 C 1.50707 * 109.47163 * 60.00598 * 7 6 2 11 11 H 1.07995 * 119.99310 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99931 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00169 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99871 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46975 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46997 * 119.99957 * 14 12 10 17 17 H 1.48498 * 109.47461 * 240.00253 * 14 12 10 18 18 H 1.08996 * 109.47341 * 270.00053 * 1 2 3 19 19 H 1.09003 * 109.46880 * 29.99890 * 1 2 3 20 20 H 1.08997 * 109.47007 * 149.99631 * 1 2 3 21 21 H 1.07993 * 126.80558 * 180.25647 * 5 4 3 22 22 H 1.08997 * 109.46848 * 300.00003 * 8 7 6 23 23 H 1.08997 * 109.46819 * 59.99987 * 8 7 6 24 24 H 1.08997 * 109.47286 * 180.02562 * 8 7 6 25 25 H 0.96700 * 114.00311 * 300.00591 * 9 7 6 26 26 H 0.96998 * 119.99752 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0005 5 6 3.6214 -0.5372 0.0063 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5390 -0.0003 8 6 1.0932 -2.8419 1.2493 9 8 3.0974 -3.3523 -0.0016 10 6 1.1044 -2.8372 -1.2305 11 1 0.8920 -2.0521 -1.9410 12 6 0.6275 -4.1123 -1.4487 13 7 0.8866 -5.0684 -0.5837 14 14 -0.3870 -4.4818 -2.9732 15 1 -0.5349 -3.2446 -3.7812 16 1 0.2969 -5.5222 -3.7826 17 1 -1.7288 -4.9723 -2.5681 18 1 -0.3634 0.0000 1.0276 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 4.5527 -1.0838 0.0119 22 1 1.6848 -2.6263 2.1389 23 1 0.1969 -2.2216 1.2497 24 1 0.8075 -3.8938 1.2496 25 1 3.6715 -3.2128 -0.7671 26 1 0.5507 -5.9653 -0.7371 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872905.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = -14.212706 kcal Electronic energy + Delta-G solvation = -12905.603819 eV Core-core repulsion = 10565.971925 eV Total energy + Delta-G solvation = -2339.631894 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.72504 -38.54539 -34.58453 -34.43578 -33.83826 -30.75893 -28.49719 -27.28165 -24.58656 -22.75139 -21.09626 -19.07744 -18.40248 -18.00438 -16.72606 -16.48067 -15.35099 -15.02102 -14.65161 -13.94064 -13.82249 -13.34472 -13.23159 -12.95802 -12.90785 -12.65169 -12.35447 -12.12490 -11.89525 -11.34989 -11.02761 -10.59457 -10.40393 -9.69475 -8.03175 -6.29859 0.66369 1.43206 1.45404 1.51035 1.57907 2.34291 2.45435 3.16727 3.52426 3.93052 4.03823 4.38966 4.54155 4.73887 4.80289 4.92569 5.00639 5.15318 5.23086 5.39609 5.58295 5.72024 5.98850 6.21964 6.75511 7.34675 7.40164 7.56819 8.95647 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.013540 C = 0.012251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.434757 B = 2067.481621 C = 2285.026175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.035 4.035 3 O 0.081 5.919 4 N -0.397 5.397 5 C -0.011 4.011 6 C -0.214 4.214 7 C 0.314 3.686 8 C -0.117 4.117 9 O -0.572 6.572 10 C -0.558 4.558 11 H 0.054 0.946 12 C 0.040 3.960 13 N -0.885 5.885 14 Si 0.949 3.051 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.098 0.902 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.200 0.800 22 H 0.018 0.982 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.358 0.642 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 6.395 0.111 6.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 O 0.017 5.983 4 N -0.103 5.103 5 C -0.188 4.188 6 C -0.219 4.219 7 C 0.274 3.726 8 C -0.174 4.174 9 O -0.376 6.376 10 C -0.596 4.596 11 H 0.072 0.928 12 C -0.163 4.163 13 N -0.521 5.521 14 Si 0.775 3.225 15 H -0.192 1.192 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.116 0.884 19 H 0.117 0.883 20 H 0.112 0.888 21 H 0.217 0.783 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.203 0.797 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.337 7.041 0.730 7.204 hybrid contribution -0.236 -1.068 -1.250 1.661 sum -1.574 5.973 -0.520 6.199 Atomic orbital electron populations 1.20541 0.82089 1.05408 1.04768 1.24608 0.97297 0.84676 1.03289 1.84644 1.11384 1.33773 1.68505 1.73717 0.97981 1.17124 1.21528 1.25094 1.00697 0.89987 1.03019 1.22615 0.92423 1.00190 1.06627 1.17058 0.82872 0.78123 0.94509 1.21580 0.98068 1.03436 0.94326 1.86485 1.36479 1.66884 1.47780 1.21677 1.35081 0.95432 1.07432 0.92756 1.25642 0.96057 0.96108 0.98532 1.70131 1.44167 1.01811 1.36001 0.85668 0.78669 0.78116 0.80067 1.19193 1.21285 1.20284 0.88401 0.88301 0.88835 0.78339 0.96329 0.91918 0.91422 0.79728 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 8.94 71.24 0.64 -1.45 15 2 C -0.04 -1.32 7.34 25.04 0.18 -1.13 15 3 O 0.08 3.00 11.20 71.59 0.80 3.80 15 4 N -0.40 -15.44 12.07 -59.27 -0.72 -16.15 15 5 C -0.01 -0.41 11.49 85.71 0.98 0.57 15 6 C -0.21 -8.98 4.84 -19.74 -0.10 -9.07 15 7 C 0.31 14.83 0.79 -12.29 -0.01 14.82 15 8 C -0.12 -5.41 8.50 71.98 0.61 -4.80 15 9 O -0.57 -28.13 12.01 -148.98 -1.79 -29.91 15 10 C -0.56 -27.89 6.76 25.60 0.17 -27.71 15 11 H 0.05 2.71 7.46 -2.91 -0.02 2.69 15 12 C 0.04 2.04 5.24 84.65 0.44 2.48 15 13 N -0.88 -47.98 10.87 21.45 0.23 -47.75 15 14 Si 0.95 40.49 29.54 68.60 2.03 42.52 15 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 16 H -0.29 -12.35 7.11 99.48 0.71 -11.64 15 17 H -0.28 -11.55 7.11 99.48 0.71 -10.85 15 18 H 0.10 2.46 8.03 -2.39 -0.02 2.44 15 19 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 20 H 0.09 3.14 6.25 -2.39 -0.01 3.13 15 21 H 0.20 6.77 8.06 -2.91 -0.02 6.74 15 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 15 23 H 0.06 2.59 6.47 -2.39 -0.02 2.57 15 24 H 0.07 3.51 6.07 -2.39 -0.01 3.50 15 25 H 0.36 15.66 8.86 -74.06 -0.66 15.00 15 26 H 0.26 13.51 8.31 -92.71 -0.77 12.74 15 Total: -1.00 -58.86 226.70 4.03 -54.83 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.55 Total: 18.96 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 2.93 Total: -26.29 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.48 Total: -63.90 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.99 Total: -26.11 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -58.86 4.03 -54.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872905.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.614 kcal (2) G-P(sol) polarization free energy of solvation -58.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds