Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86807 * 119.99656 * 2 1 4 4 H 1.48503 * 109.46807 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47225 * 299.99931 * 3 2 1 6 6 H 1.48498 * 109.46933 * 60.00400 * 3 2 1 7 7 C 1.39007 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00349 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.36671 * 126.88654 * 179.97438 * 9 7 2 11 11 C 1.34950 * 106.72691 * 180.23204 * 10 9 7 12 12 C 1.50700 * 125.48418 * 179.74349 * 11 10 9 13 13 C 1.50692 * 109.47204 * 124.99635 * 12 11 10 14 14 O 1.20830 * 120.00099 * 359.97438 * 13 12 11 15 15 O 1.34227 * 120.00237 * 179.97438 * 13 12 11 16 16 N 1.33453 * 109.02493 * 359.56683 * 11 10 9 17 17 N 1.28761 * 109.99122 * 0.44963 * 16 11 10 18 18 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 19 19 H 1.08002 * 126.63309 * 359.96283 * 10 9 7 20 20 H 1.09006 * 109.46690 * 244.99046 * 12 11 10 21 21 H 1.08994 * 109.47226 * 4.99171 * 12 11 10 22 22 H 0.96699 * 117.00366 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2464 1.6178 0.0000 4 1 3.7064 1.3465 0.0006 5 1 1.8877 2.3965 -1.2125 6 1 1.8877 2.3964 1.2125 7 6 2.0076 -1.2038 0.0005 8 1 3.0876 -1.2038 0.0001 9 7 1.3198 -2.3952 0.0016 10 6 1.8564 -3.6522 0.0018 11 6 0.8203 -4.5168 -0.0023 12 6 0.9348 -6.0194 -0.0092 13 6 0.1604 -6.5875 1.1520 14 8 -0.4242 -5.8481 1.9080 15 8 0.1200 -7.9150 1.3466 16 7 -0.3221 -3.8269 0.0047 17 7 -0.0733 -2.5635 0.0035 18 1 -0.4851 0.8400 -0.0004 19 1 2.9065 -3.9046 0.0005 20 1 0.5293 -6.4104 -0.9424 21 1 1.9832 -6.3043 0.0790 22 1 -0.3892 -8.2323 2.1050 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925228.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -32.867048 kcal Electronic energy + Delta-G solvation = -11939.489233 eV Core-core repulsion = 9495.508082 eV Total energy + Delta-G solvation = -2443.981150 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.11595 -40.86104 -36.95854 -36.05595 -33.51476 -32.92953 -28.87336 -27.28484 -23.44561 -23.01518 -21.34116 -19.36201 -18.88532 -17.48688 -17.23774 -16.72961 -16.04513 -15.66590 -15.01996 -14.51146 -13.87373 -13.82878 -13.30701 -13.16519 -12.97282 -12.39067 -12.02313 -11.78159 -11.56816 -11.48431 -11.11129 -10.65117 -9.35873 -8.68539 -6.62510 1.10556 1.38243 1.41828 1.60035 1.64288 1.93838 2.07590 2.60779 2.81230 2.94022 3.90524 4.31747 4.58698 4.69924 4.71462 4.91045 5.12048 5.18827 5.76075 5.95810 5.97600 6.61361 7.18667 7.20498 8.23059 8.33090 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.097894 B = 0.008405 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.954455 B = 3330.403260 C = 3454.327365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C -0.006 4.006 3 Si 1.031 2.969 4 H -0.235 1.235 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.342 4.342 8 H 0.151 0.849 9 N -0.168 5.168 10 C -0.115 4.115 11 C -0.077 4.077 12 C -0.005 4.005 13 C 0.481 3.519 14 O -0.552 6.552 15 O -0.508 6.508 16 N -0.343 5.343 17 N -0.156 5.156 18 H 0.286 0.714 19 H 0.205 0.795 20 H 0.129 0.871 21 H 0.154 0.846 22 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 -7.177 -0.332 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.220 4.220 3 Si 0.848 3.152 4 H -0.158 1.158 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.478 4.478 8 H 0.168 0.832 9 N 0.061 4.939 10 C -0.269 4.269 11 C -0.226 4.226 12 C -0.044 4.044 13 C 0.324 3.676 14 O -0.441 6.441 15 O -0.322 6.322 16 N -0.202 5.202 17 N -0.133 5.133 18 H 0.096 0.904 19 H 0.221 0.779 20 H 0.147 0.853 21 H 0.172 0.828 22 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.064 -6.041 -0.457 8.572 hybrid contribution 0.446 0.167 0.651 0.807 sum 6.510 -5.874 0.195 8.770 Atomic orbital electron populations 1.70330 1.08935 1.30407 1.34355 1.27180 0.96522 1.05111 0.93209 0.84381 0.79137 0.73185 0.78522 1.15753 1.19202 1.19581 1.21071 0.93727 0.80724 1.52308 0.83162 1.47100 1.06728 1.06239 1.33870 1.23141 1.01021 0.83986 1.18772 1.21010 0.88865 0.96688 1.15992 1.19456 1.03139 0.86383 0.95385 1.23804 0.78027 0.79978 0.85762 1.90769 1.44150 1.61541 1.47684 1.84477 1.70622 1.23582 1.53504 1.73971 1.27222 1.00791 1.18205 1.82522 0.90631 1.07958 1.32163 0.90359 0.77853 0.85343 0.82839 0.71668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.33 11.89 21.66 0.26 -46.07 14 2 C -0.01 -0.30 5.50 84.96 0.47 0.17 14 3 Si 1.03 36.71 29.55 68.60 2.03 38.74 14 4 H -0.24 -7.35 7.11 99.48 0.71 -6.65 14 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 14 6 H -0.27 -9.55 7.11 99.48 0.71 -8.84 14 7 C -0.34 -17.73 10.31 83.98 0.87 -16.87 14 8 H 0.15 6.57 7.83 -2.91 -0.02 6.55 14 9 N -0.17 -9.45 3.78 -190.21 -0.72 -10.17 14 10 C -0.12 -5.33 11.45 83.18 0.95 -4.38 14 11 C -0.08 -3.59 5.90 41.56 0.25 -3.34 14 12 C 0.00 -0.15 6.37 29.10 0.19 0.04 14 13 C 0.48 16.36 8.32 71.23 0.59 16.95 14 14 O -0.55 -25.44 16.30 21.95 0.36 -25.08 14 15 O -0.51 -11.90 13.42 -51.38 -0.69 -12.59 14 16 N -0.34 -19.99 11.66 -48.99 -0.57 -20.56 14 17 N -0.16 -9.89 11.73 37.02 0.43 -9.46 14 18 H 0.29 14.75 8.31 -92.71 -0.77 13.98 14 19 H 0.20 7.06 8.06 -2.91 -0.02 7.03 14 20 H 0.13 3.43 8.14 -2.38 -0.02 3.41 14 21 H 0.15 3.33 8.10 -2.39 -0.02 3.31 14 22 H 0.42 6.46 9.10 -74.06 -0.67 5.78 14 Total: -1.00 -81.60 217.03 5.00 -76.60 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.59 Total: 16.01 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.31 Total: -7.43 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -0.60 Total: -86.26 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.33 Total: -37.67 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -81.60 5.00 -76.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925228.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.736 kcal (2) G-P(sol) polarization free energy of solvation -81.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds