Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48497 * 109.47561 * 240.00375 * 3 2 1 5 5 H 1.48505 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47243 * 120.00176 * 3 2 1 7 7 C 1.37876 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00568 * 170.57876 * 7 2 1 9 9 C 1.50701 * 119.99716 * 350.57534 * 7 2 1 10 10 H 1.08998 * 109.46957 * 54.55768 * 9 7 2 11 11 C 1.53004 * 109.47333 * 294.55824 * 9 7 2 12 12 N 1.46893 * 109.47135 * 176.81586 * 11 9 7 13 13 C 1.50701 * 109.47267 * 174.55718 * 9 7 2 14 14 C 1.38420 * 122.54117 * 239.95464 * 13 9 7 15 15 C 1.33390 * 114.92164 * 180.02562 * 14 13 9 16 16 S 1.75878 * 109.59378 * 359.97438 * 15 14 13 17 17 C 1.33393 * 122.53833 * 59.97872 * 13 9 7 18 18 H 0.97008 * 119.99935 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46856 * 296.81603 * 11 9 7 20 20 H 1.09001 * 109.47112 * 56.81168 * 11 9 7 21 21 H 1.00902 * 111.00092 * 184.52492 * 12 11 9 22 22 H 1.00901 * 111.00133 * 308.47674 * 12 11 9 23 23 H 1.08000 * 122.53942 * 0.04165 * 14 13 9 24 24 H 1.07999 * 125.20173 * 180.26686 * 15 14 13 25 25 H 1.07995 * 125.20332 * 359.97438 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0736 -1.2003 -0.1536 9 6 1.2662 -2.4904 0.2126 10 1 0.4569 -2.5712 -0.5130 11 6 0.6867 -2.5206 1.6283 12 7 -0.0968 -3.7497 1.8106 13 6 2.2177 -3.6455 0.0346 14 6 2.0287 -4.6246 -0.9255 15 6 2.9630 -5.5763 -0.9491 16 16 4.1652 -5.2537 0.2935 17 6 3.3055 -3.8020 0.7906 18 1 -0.4850 0.8401 0.0004 19 1 1.4996 -2.4968 2.3542 20 1 0.0425 -1.6537 1.7758 21 1 -0.5507 -3.7589 2.7117 22 1 -0.7684 -3.8641 1.0663 23 1 1.1887 -4.6182 -1.6041 24 1 2.9813 -6.4140 -1.6304 25 1 3.6117 -3.1387 1.5859 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259928021.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = 23.001939 kcal Electronic energy + Delta-G solvation = -10441.134588 eV Core-core repulsion = 8545.869313 eV Total energy + Delta-G solvation = -1895.265275 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.70766 -34.25686 -32.21042 -29.60353 -27.13602 -24.06775 -23.11117 -20.23271 -17.76092 -16.86832 -16.33097 -14.81518 -14.62832 -13.89779 -13.20390 -12.80935 -12.32005 -12.10574 -11.88182 -11.44773 -11.07311 -10.95405 -10.71648 -10.29307 -10.00005 -9.46351 -9.29853 -8.45431 -7.92815 -7.64665 -7.41464 -6.11309 -4.13011 1.88453 2.47737 2.80343 3.28520 3.33130 3.36303 3.79513 4.39927 5.20082 5.64607 5.71192 6.08546 6.35520 6.41464 6.70956 6.88341 6.96389 7.23465 7.35437 7.45725 7.84557 7.92707 8.04967 8.31657 8.41066 8.91301 9.50541 10.96962 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.012006 C = 0.010388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.352467 B = 2331.556285 C = 2694.742095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.100 3.900 10 H 0.039 0.961 11 C 0.074 3.926 12 N -0.855 5.855 13 C -0.042 4.042 14 C -0.112 4.112 15 C -0.227 4.227 16 S 0.014 5.986 17 C -0.202 4.202 18 H 0.262 0.738 19 H 0.046 0.954 20 H 0.044 0.956 21 H 0.319 0.681 22 H 0.330 0.670 23 H 0.130 0.870 24 H 0.151 0.849 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.702 0.846 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.078 3.922 10 H 0.057 0.943 11 C -0.056 4.056 12 N -0.382 5.382 13 C -0.052 4.052 14 C -0.144 4.144 15 C -0.362 4.362 16 S 0.275 5.725 17 C -0.336 4.336 18 H 0.072 0.928 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.129 0.871 22 H 0.141 0.859 23 H 0.148 0.852 24 H 0.168 0.832 25 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.584 -7.677 1.250 9.028 hybrid contribution -1.660 2.300 -0.395 2.864 sum 2.924 -5.377 0.854 6.180 Atomic orbital electron populations 1.69944 1.05978 1.26890 1.49967 1.24979 0.94817 0.99184 0.94797 0.86668 0.79708 0.82973 0.78816 1.20150 1.21298 1.20139 1.21095 0.94235 0.90006 1.49565 0.92224 1.17618 0.92433 0.89178 0.92952 0.94287 1.21948 0.95986 0.88908 0.98771 1.59011 1.31256 1.42051 1.05842 1.19349 0.96002 0.96678 0.93195 1.20224 0.99655 0.94467 1.00053 1.25253 1.00477 1.05224 1.05214 1.83721 1.30425 1.25232 1.33113 1.25097 1.00488 1.00592 1.07470 0.92843 0.93514 0.93814 0.87103 0.85881 0.85247 0.83175 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 12.15 55.43 0.67 -24.09 15 2 C 0.06 1.73 5.18 -17.82 -0.09 1.64 15 3 Si 0.89 20.94 29.55 -169.99 -5.02 15.91 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.51 -13.70 8.24 -34.44 -0.28 -13.98 15 8 H 0.06 1.61 7.59 -52.48 -0.40 1.22 15 9 C 0.10 2.43 2.00 -92.92 -0.19 2.25 15 10 H 0.04 1.04 7.98 -51.93 -0.41 0.62 15 11 C 0.07 1.70 5.96 -3.83 -0.02 1.67 15 12 N -0.85 -16.60 9.32 -10.37 -0.10 -16.70 15 13 C -0.04 -0.91 4.31 -106.25 -0.46 -1.37 15 14 C -0.11 -2.21 9.92 -41.21 -0.41 -2.62 15 15 C -0.23 -3.94 11.23 29.04 0.33 -3.61 15 16 S 0.01 0.24 23.34 -107.50 -2.51 -2.26 15 17 C -0.20 -4.17 9.95 29.04 0.29 -3.89 15 18 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 19 H 0.05 1.08 7.63 -51.93 -0.40 0.68 15 20 H 0.04 1.10 6.83 -51.93 -0.35 0.75 15 21 H 0.32 5.44 9.08 -39.29 -0.36 5.08 15 22 H 0.33 6.24 8.93 -39.29 -0.35 5.89 15 23 H 0.13 2.38 8.06 -52.49 -0.42 1.96 15 24 H 0.15 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.15 3.15 7.91 -52.49 -0.42 2.73 15 LS Contribution 232.85 15.07 3.51 3.51 Total: -1.00 -27.67 232.85 -6.95 -34.62 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.67 Total: 8.91 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -0.84 Total: -19.90 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.58 Total: -40.79 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.51 Total: -2.26 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.67 -6.95 -34.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259928021.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.622 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds