Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48497 * 109.47561 * 240.00375 * 3 2 1 5 5 H 1.48505 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47243 * 120.00176 * 3 2 1 7 7 C 1.37876 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00568 * 170.57876 * 7 2 1 9 9 C 1.50701 * 119.99716 * 350.57534 * 7 2 1 10 10 H 1.08998 * 109.46957 * 54.55768 * 9 7 2 11 11 C 1.53004 * 109.47333 * 294.55824 * 9 7 2 12 12 N 1.46893 * 109.47135 * 176.81586 * 11 9 7 13 13 C 1.50701 * 109.47267 * 174.55718 * 9 7 2 14 14 C 1.38420 * 122.54117 * 239.95464 * 13 9 7 15 15 C 1.33390 * 114.92164 * 180.02562 * 14 13 9 16 16 S 1.75878 * 109.59378 * 359.97438 * 15 14 13 17 17 C 1.33393 * 122.53833 * 59.97872 * 13 9 7 18 18 H 0.97008 * 119.99935 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46856 * 296.81603 * 11 9 7 20 20 H 1.09001 * 109.47112 * 56.81168 * 11 9 7 21 21 H 1.00902 * 111.00092 * 184.52492 * 12 11 9 22 22 H 1.00901 * 111.00133 * 308.47674 * 12 11 9 23 23 H 1.08000 * 122.53942 * 0.04165 * 14 13 9 24 24 H 1.07999 * 125.20173 * 180.26686 * 15 14 13 25 25 H 1.07995 * 125.20332 * 359.97438 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0736 -1.2003 -0.1536 9 6 1.2662 -2.4904 0.2126 10 1 0.4569 -2.5712 -0.5130 11 6 0.6867 -2.5206 1.6283 12 7 -0.0968 -3.7497 1.8106 13 6 2.2177 -3.6455 0.0346 14 6 2.0287 -4.6246 -0.9255 15 6 2.9630 -5.5763 -0.9491 16 16 4.1652 -5.2537 0.2935 17 6 3.3055 -3.8020 0.7906 18 1 -0.4850 0.8401 0.0004 19 1 1.4996 -2.4968 2.3542 20 1 0.0425 -1.6537 1.7758 21 1 -0.5507 -3.7589 2.7117 22 1 -0.7684 -3.8641 1.0663 23 1 1.1887 -4.6182 -1.6041 24 1 2.9813 -6.4140 -1.6304 25 1 3.6117 -3.1387 1.5859 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259928021.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = 4.842479 kcal Electronic energy + Delta-G solvation = -10441.922041 eV Core-core repulsion = 8545.869313 eV Total energy + Delta-G solvation = -1896.052728 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.33981 -36.02100 -34.14867 -31.29776 -28.85969 -26.00853 -24.74686 -21.95991 -19.38289 -18.56441 -18.14683 -16.67080 -16.31665 -15.61369 -14.85480 -14.54958 -14.09605 -13.77626 -13.56332 -13.01021 -12.89651 -12.80709 -12.47918 -11.95011 -11.86628 -11.30803 -11.16373 -10.51105 -9.42615 -9.33463 -8.92718 -8.16236 -6.25138 0.38898 1.04405 1.29457 1.41024 1.42039 1.49668 2.18375 2.44777 3.12994 4.05130 4.28897 4.51892 4.70820 4.85396 4.94616 5.08405 5.29645 5.49862 5.55503 5.72587 5.82944 6.11917 6.24956 6.50531 6.73505 6.90610 7.41323 8.90203 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.040726 B = 0.012006 C = 0.010388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.352467 B = 2331.556285 C = 2694.742095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.102 3.898 10 H 0.008 0.992 11 C 0.090 3.910 12 N -0.844 5.844 13 C -0.060 4.060 14 C -0.143 4.143 15 C -0.209 4.209 16 S 0.075 5.925 17 C -0.228 4.228 18 H 0.262 0.738 19 H 0.042 0.958 20 H 0.015 0.985 21 H 0.336 0.664 22 H 0.335 0.665 23 H 0.134 0.866 24 H 0.189 0.811 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -7.788 0.746 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.081 3.919 10 H 0.026 0.974 11 C -0.041 4.041 12 N -0.373 5.373 13 C -0.072 4.072 14 C -0.174 4.174 15 C -0.344 4.344 16 S 0.337 5.663 17 C -0.363 4.363 18 H 0.071 0.929 19 H 0.060 0.940 20 H 0.033 0.967 21 H 0.147 0.853 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.206 0.794 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.704 -8.779 1.160 10.534 hybrid contribution -1.970 2.540 -0.368 3.235 sum 3.734 -6.240 0.792 7.315 Atomic orbital electron populations 1.70049 1.07143 1.27514 1.50722 1.25680 0.95570 1.02184 0.94548 0.85745 0.78586 0.79299 0.78903 1.19830 1.20843 1.19551 1.21369 0.94031 0.91540 1.49536 0.93063 1.17433 0.92070 0.89727 0.92716 0.97351 1.21603 0.95561 0.89072 0.97865 1.58891 1.31521 1.39838 1.07014 1.19242 0.96271 0.96783 0.94869 1.20243 1.01263 0.95216 1.00660 1.25733 0.98962 1.04951 1.04736 1.83482 1.28776 1.22106 1.31929 1.25180 1.01083 1.02557 1.07450 0.92874 0.93987 0.96720 0.85274 0.85392 0.84862 0.79424 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.98 12.15 21.45 0.26 -51.72 15 2 C 0.02 1.07 5.18 84.66 0.44 1.51 15 3 Si 0.95 43.20 29.55 68.60 2.03 45.23 15 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.53 -28.80 8.24 25.60 0.21 -28.59 15 8 H 0.05 2.82 7.59 -2.91 -0.02 2.80 15 9 C 0.10 5.10 2.00 -12.28 -0.02 5.07 15 10 H 0.01 0.46 7.98 -2.39 -0.02 0.44 15 11 C 0.09 4.20 5.96 86.31 0.51 4.71 15 12 N -0.84 -32.58 9.32 -186.72 -1.74 -34.32 15 13 C -0.06 -2.64 4.31 -20.92 -0.09 -2.73 15 14 C -0.14 -5.43 9.92 21.22 0.21 -5.22 15 15 C -0.21 -6.58 11.23 66.72 0.75 -5.83 15 16 S 0.08 2.40 23.34 -56.49 -1.32 1.08 15 17 C -0.23 -9.23 9.95 66.72 0.66 -8.57 15 18 H 0.26 14.23 8.31 -92.70 -0.77 13.46 15 19 H 0.04 1.96 7.63 -2.38 -0.02 1.95 15 20 H 0.01 0.76 6.83 -2.39 -0.02 0.74 15 21 H 0.34 11.15 9.08 -89.69 -0.81 10.33 15 22 H 0.33 12.64 8.93 -89.69 -0.80 11.84 15 23 H 0.13 4.84 8.06 -2.91 -0.02 4.81 15 24 H 0.19 4.42 8.06 -2.91 -0.02 4.40 15 25 H 0.15 5.99 7.91 -2.91 -0.02 5.96 15 Total: -1.00 -58.80 232.85 1.49 -57.31 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.41 Total: 22.06 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.67 Total: -39.64 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.48 Total: -86.04 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -58.80 1.49 -57.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259928021.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.157 kcal (2) G-P(sol) polarization free energy of solvation -58.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds