Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30981 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48504 * 109.46956 * 274.98142 * 3 2 1 5 5 H 1.48501 * 109.47124 * 34.97849 * 3 2 1 6 6 H 1.48496 * 109.47222 * 154.97868 * 3 2 1 7 7 C 1.39738 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99544 * 186.03919 * 7 2 1 9 9 C 1.41490 * 120.00168 * 6.04502 * 7 2 1 10 10 C 1.39017 * 126.02114 * 174.33189 * 9 7 2 11 11 N 1.35019 * 106.45345 * 179.73462 * 10 9 7 12 12 C 1.46498 * 126.48837 * 180.24057 * 11 10 9 13 13 C 1.50700 * 109.47139 * 125.00173 * 12 11 10 14 14 O 1.20822 * 120.00118 * 359.97438 * 13 12 11 15 15 O 1.34232 * 120.00266 * 179.97438 * 13 12 11 16 16 N 1.40124 * 107.01791 * 0.26068 * 11 10 9 17 17 N 1.28668 * 108.93454 * 0.02562 * 16 11 10 18 18 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.77163 * 359.97438 * 10 9 7 20 20 H 1.09007 * 109.47112 * 245.00100 * 12 11 10 21 21 H 1.08998 * 109.47395 * 5.00067 * 12 11 10 22 22 H 0.96699 * 117.00364 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.3860 2.1072 -1.3948 5 1 1.4978 2.6200 0.8026 6 1 3.5900 1.4121 0.5921 7 6 2.0085 -1.2102 0.0005 8 1 3.0840 -1.2127 0.0989 9 6 1.3069 -2.4322 -0.1280 10 6 1.8780 -3.6934 -0.2535 11 7 0.8545 -4.5695 -0.3424 12 6 0.9623 -6.0237 -0.4828 13 6 0.1818 -6.6940 0.6184 14 8 -0.4039 -6.0255 1.4369 15 8 0.1374 -8.0336 0.6901 16 7 -0.3302 -3.8243 -0.2754 17 7 -0.0333 -2.5782 -0.1544 18 1 -0.4850 0.8400 -0.0004 19 1 2.9323 -3.9268 -0.2719 20 1 0.5596 -6.3263 -1.4496 21 1 2.0096 -6.3185 -0.4172 22 1 -0.3756 -8.4178 1.4142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935120.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 6.407454 kcal Electronic energy + Delta-G solvation = -11924.823185 eV Core-core repulsion = 9482.545105 eV Total energy + Delta-G solvation = -2442.278080 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.30982 -39.51090 -35.99612 -33.80018 -32.71187 -29.40090 -27.99291 -24.88609 -22.33557 -20.27688 -20.07596 -17.95114 -17.35840 -16.36265 -15.75743 -15.14694 -14.76847 -13.85263 -13.16681 -12.94019 -12.76424 -12.42385 -11.39493 -11.14838 -11.12213 -10.91986 -10.48817 -10.26716 -9.73283 -9.31819 -8.96614 -8.62745 -7.50891 -6.37245 -4.19074 2.35641 2.55548 3.09033 3.21019 3.23641 3.26204 3.62203 4.14363 4.32905 4.99620 5.26655 5.35991 5.54231 6.10005 6.56624 6.90320 7.05292 7.21617 7.49673 7.91633 8.11670 8.41926 8.80347 9.07608 10.16072 10.59702 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.099818 B = 0.008328 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.442756 B = 3361.238238 C = 3493.011862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.151 3.849 10 C -0.155 4.155 11 N -0.386 5.386 12 C 0.156 3.844 13 C 0.457 3.543 14 O -0.479 6.479 15 O -0.523 6.523 16 N -0.103 5.103 17 N -0.220 5.220 18 H 0.273 0.727 19 H 0.160 0.840 20 H 0.116 0.884 21 H 0.125 0.875 22 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -10.175 -0.997 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.023 3.977 10 C -0.302 4.302 11 N -0.183 5.183 12 C 0.030 3.970 13 C 0.296 3.704 14 O -0.363 6.363 15 O -0.336 6.336 16 N -0.080 5.080 17 N -0.094 5.094 18 H 0.084 0.916 19 H 0.177 0.823 20 H 0.134 0.866 21 H 0.143 0.857 22 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.205 -9.717 -1.085 10.023 hybrid contribution 1.254 0.328 0.544 1.406 sum 3.459 -9.389 -0.541 10.021 Atomic orbital electron populations 1.70024 1.06873 1.27947 1.35224 1.25820 0.94836 1.00678 0.93384 0.86283 0.80182 0.81333 0.78653 1.19842 1.20500 1.18876 1.18550 0.94092 0.88107 1.48257 0.89955 1.19230 0.87546 0.92440 0.98477 1.22850 0.92822 0.90294 1.24278 1.49115 1.07641 1.03860 1.57730 1.20597 1.01475 0.78711 0.96206 1.23793 0.79994 0.80267 0.86382 1.90833 1.40906 1.64898 1.39678 1.84490 1.70644 1.23231 1.55207 1.81584 1.05022 0.98723 1.22689 1.75107 1.14631 1.05291 1.14409 0.91649 0.82306 0.86629 0.85677 0.73271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.43 11.95 55.54 0.66 -21.76 14 2 C 0.07 1.96 5.49 -17.35 -0.10 1.86 14 3 Si 0.91 19.79 29.56 -169.99 -5.03 14.77 14 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 14 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 14 7 C -0.45 -12.65 9.37 -37.78 -0.35 -13.01 14 8 H 0.08 2.11 7.85 -52.49 -0.41 1.69 14 9 C 0.15 4.29 6.72 -85.01 -0.57 3.72 14 10 C -0.16 -3.66 11.61 -15.86 -0.18 -3.85 14 11 N -0.39 -8.62 3.41 -61.52 -0.21 -8.82 14 12 C 0.16 2.36 7.13 -5.19 -0.04 2.32 14 13 C 0.46 7.21 8.36 36.01 0.30 7.51 14 14 O -0.48 -10.14 16.49 -18.75 -0.31 -10.45 14 15 O -0.52 -5.77 13.42 -39.26 -0.53 -6.29 14 16 N -0.10 -2.80 12.84 60.35 0.77 -2.02 14 17 N -0.22 -6.62 10.58 32.05 0.34 -6.28 14 18 H 0.27 7.21 8.30 -40.82 -0.34 6.87 14 19 H 0.16 3.09 8.06 -52.49 -0.42 2.67 14 20 H 0.12 1.43 8.14 -51.93 -0.42 1.00 14 21 H 0.13 1.38 8.08 -51.93 -0.42 0.96 14 22 H 0.41 2.87 9.10 45.56 0.41 3.28 14 LS Contribution 217.77 15.07 3.28 3.28 Total: -1.00 -36.40 217.77 -2.35 -38.75 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -0.40 Total: 0.29 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.94 Total: -1.45 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.57 Total: -38.89 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.84 Total: -16.74 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -36.40 -2.35 -38.75 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935120.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.156 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds