Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30981 * 1 3 3 Si 1.86798 * 119.99999 * 2 1 4 4 H 1.48504 * 109.46956 * 274.98142 * 3 2 1 5 5 H 1.48501 * 109.47124 * 34.97849 * 3 2 1 6 6 H 1.48496 * 109.47222 * 154.97868 * 3 2 1 7 7 C 1.39738 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99544 * 186.03919 * 7 2 1 9 9 C 1.41490 * 120.00168 * 6.04502 * 7 2 1 10 10 C 1.39017 * 126.02114 * 174.33189 * 9 7 2 11 11 N 1.35019 * 106.45345 * 179.73462 * 10 9 7 12 12 C 1.46498 * 126.48837 * 180.24057 * 11 10 9 13 13 C 1.50700 * 109.47139 * 125.00173 * 12 11 10 14 14 O 1.20822 * 120.00118 * 359.97438 * 13 12 11 15 15 O 1.34232 * 120.00266 * 179.97438 * 13 12 11 16 16 N 1.40124 * 107.01791 * 0.26068 * 11 10 9 17 17 N 1.28668 * 108.93454 * 0.02562 * 16 11 10 18 18 H 0.97000 * 120.00131 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.77163 * 359.97438 * 10 9 7 20 20 H 1.09007 * 109.47112 * 245.00100 * 12 11 10 21 21 H 1.08998 * 109.47395 * 5.00067 * 12 11 10 22 22 H 0.96699 * 117.00364 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2438 1.6177 0.0000 4 1 2.3860 2.1072 -1.3948 5 1 1.4978 2.6200 0.8026 6 1 3.5900 1.4121 0.5921 7 6 2.0085 -1.2102 0.0005 8 1 3.0840 -1.2127 0.0989 9 6 1.3069 -2.4322 -0.1280 10 6 1.8780 -3.6934 -0.2535 11 7 0.8545 -4.5695 -0.3424 12 6 0.9623 -6.0237 -0.4828 13 6 0.1818 -6.6940 0.6184 14 8 -0.4039 -6.0255 1.4369 15 8 0.1374 -8.0336 0.6901 16 7 -0.3302 -3.8243 -0.2754 17 7 -0.0333 -2.5782 -0.1544 18 1 -0.4850 0.8400 -0.0004 19 1 2.9323 -3.9268 -0.2719 20 1 0.5596 -6.3263 -1.4496 21 1 2.0096 -6.3185 -0.4172 22 1 -0.3756 -8.4178 1.4142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935120.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = -23.393080 kcal Electronic energy + Delta-G solvation = -11926.115433 eV Core-core repulsion = 9482.545105 eV Total energy + Delta-G solvation = -2443.570328 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.97289 -41.00307 -37.17466 -35.62054 -34.51131 -31.35630 -29.57726 -26.84283 -23.81476 -22.17582 -21.75452 -19.19759 -19.12616 -17.68519 -17.01738 -16.98805 -16.50325 -15.52302 -14.96730 -14.71546 -14.09205 -13.82900 -12.95020 -12.88962 -12.78115 -12.58775 -12.09523 -11.85092 -11.60682 -11.19140 -10.89442 -10.49722 -9.49757 -8.31425 -6.23160 0.87813 1.13433 1.45950 1.46520 1.61581 1.69479 2.22533 2.32946 2.36164 3.51726 3.89835 4.17799 4.21597 4.41887 4.98317 5.12910 5.29996 5.53190 5.56128 6.27848 6.38808 6.84904 6.94953 7.07300 8.22525 8.68606 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.099818 B = 0.008328 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.442756 B = 3361.238238 C = 3493.011862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.017 3.983 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.113 4.113 11 N -0.368 5.368 12 C 0.138 3.862 13 C 0.470 3.530 14 O -0.544 6.544 15 O -0.499 6.499 16 N -0.146 5.146 17 N -0.279 5.279 18 H 0.273 0.727 19 H 0.210 0.790 20 H 0.152 0.848 21 H 0.180 0.820 22 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -11.807 -1.497 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.523 4.523 8 H 0.116 0.884 9 C -0.032 4.032 10 C -0.264 4.264 11 N -0.164 5.164 12 C 0.015 3.985 13 C 0.312 3.688 14 O -0.432 6.432 15 O -0.312 6.312 16 N -0.123 5.123 17 N -0.151 5.151 18 H 0.083 0.917 19 H 0.227 0.773 20 H 0.169 0.831 21 H 0.197 0.803 22 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 4.528 -11.466 -1.597 12.430 hybrid contribution 0.615 0.434 0.668 1.006 sum 5.143 -11.032 -0.929 12.207 Atomic orbital electron populations 1.70198 1.09006 1.28840 1.37694 1.26872 0.95598 1.04760 0.92473 0.85036 0.78930 0.75810 0.78802 1.19151 1.20502 1.17275 1.19004 0.94920 0.88883 1.49520 0.88435 1.19914 0.87810 0.94755 1.00739 1.23617 0.94899 0.89102 1.18780 1.49538 1.06219 1.06761 1.53907 1.21364 1.05094 0.74372 0.97629 1.23736 0.78581 0.81256 0.85260 1.90849 1.43734 1.66509 1.42156 1.84425 1.70389 1.20452 1.55958 1.81447 1.06862 0.98546 1.25413 1.75073 1.16142 1.06846 1.17046 0.91694 0.77305 0.83051 0.80284 0.70776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.15 11.95 21.79 0.26 -49.89 14 2 C 0.02 0.92 5.49 85.18 0.47 1.38 14 3 Si 0.99 41.18 29.56 68.60 2.03 43.21 14 4 H -0.27 -10.62 7.11 99.48 0.71 -9.92 14 5 H -0.28 -11.41 7.11 99.48 0.71 -10.71 14 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 14 7 C -0.49 -27.34 9.37 23.43 0.22 -27.12 14 8 H 0.10 4.91 7.85 -2.91 -0.02 4.88 14 9 C 0.10 5.65 6.72 39.67 0.27 5.92 14 10 C -0.11 -5.04 11.61 84.39 0.98 -4.06 14 11 N -0.37 -15.64 3.41 -348.56 -1.19 -16.83 14 12 C 0.14 3.56 7.13 85.63 0.61 4.17 14 13 C 0.47 13.45 8.36 71.24 0.60 14.04 14 14 O -0.54 -22.62 16.49 21.98 0.36 -22.26 14 15 O -0.50 -8.97 13.42 -51.44 -0.69 -9.66 14 16 N -0.15 -8.08 12.84 37.02 0.48 -7.61 14 17 N -0.28 -17.42 10.58 -52.51 -0.56 -17.98 14 18 H 0.27 15.18 8.30 -92.71 -0.77 14.41 14 19 H 0.21 7.01 8.06 -2.91 -0.02 6.99 14 20 H 0.15 2.98 8.14 -2.38 -0.02 2.96 14 21 H 0.18 2.74 8.08 -2.39 -0.02 2.72 14 22 H 0.43 4.50 9.10 -74.06 -0.67 3.82 14 Total: -1.00 -84.81 217.77 4.42 -80.39 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.59 Total: 6.30 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 3.14 Total: -5.67 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -1.01 Total: -92.31 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.33 Total: -31.92 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -84.81 4.42 -80.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935120.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -84.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds