Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38422 * 122.54249 * 99.73793 * 13 10 9 15 15 C 1.33383 * 114.92229 * 179.76114 * 14 13 10 16 16 S 1.75885 * 109.59055 * 0.47180 * 15 14 13 17 17 C 1.33390 * 122.53587 * 280.02083 * 13 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 22 22 H 1.00899 * 111.00294 * 183.95639 * 12 10 9 23 23 H 1.07999 * 122.53697 * 359.97438 * 14 13 10 24 24 H 1.08001 * 125.20735 * 180.20854 * 15 14 13 25 25 H 1.08003 * 125.20215 * 359.97438 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.1657 -2.8673 1.3452 15 6 7.4979 -2.8390 1.2856 16 16 8.0073 -2.4942 -0.3622 17 6 6.3330 -2.4133 -0.8947 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 4.0322 -2.8162 -2.0400 22 1 3.9070 -4.2684 -1.2392 23 1 5.6292 -3.0582 2.2629 24 1 8.1621 -2.9988 2.1221 25 1 6.0102 -2.2127 -1.9056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259995061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = 28.174071 kcal Electronic energy + Delta-G solvation = -10241.787309 eV Core-core repulsion = 8346.746315 eV Total energy + Delta-G solvation = -1895.040994 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.47536 -34.42885 -32.24986 -28.92460 -28.76395 -25.21773 -22.64133 -20.21283 -18.31915 -17.65103 -16.48230 -15.27782 -15.01610 -14.08077 -13.41659 -13.06485 -12.75195 -12.43142 -12.35244 -11.99113 -11.51075 -11.01559 -10.68034 -10.24183 -10.08305 -9.73494 -9.10033 -8.60551 -8.44654 -8.16899 -7.93521 -5.92451 -3.87415 1.20150 1.85275 2.15795 2.98002 3.35517 3.43073 3.46541 4.53309 5.08974 5.29268 5.33389 5.47390 5.67938 5.72579 6.09088 6.24135 6.52604 6.58956 6.79708 7.13836 7.33830 7.80892 7.95693 8.12282 8.69440 9.20043 9.69967 11.21362 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050848 B = 0.009799 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.527248 B = 2856.878107 C = 3086.956833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.063 3.937 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.160 3.840 11 H 0.084 0.916 12 N -0.818 5.818 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.216 4.216 16 S 0.059 5.941 17 C -0.214 4.214 18 H 0.260 0.740 19 H 0.010 0.990 20 H 0.019 0.981 21 H 0.332 0.668 22 H 0.325 0.675 23 H 0.141 0.859 24 H 0.160 0.840 25 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.124 -5.152 0.266 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.533 4.533 8 H 0.099 0.901 9 C -0.037 4.037 10 C 0.046 3.954 11 H 0.102 0.898 12 N -0.344 5.344 13 C -0.136 4.136 14 C -0.152 4.152 15 C -0.352 4.352 16 S 0.322 5.678 17 C -0.350 4.350 18 H 0.070 0.930 19 H 0.028 0.972 20 H 0.037 0.963 21 H 0.145 0.855 22 H 0.136 0.864 23 H 0.159 0.841 24 H 0.177 0.823 25 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.620 -4.680 -0.248 16.308 hybrid contribution 0.181 0.738 0.556 0.942 sum 15.801 -3.942 0.308 16.289 Atomic orbital electron populations 1.69908 1.06135 1.26467 1.52124 1.24999 0.94679 0.98728 0.95298 0.86900 0.80357 0.84359 0.78350 1.20520 1.21514 1.19272 1.21048 0.88768 0.94598 1.48883 0.90128 1.19612 0.97825 0.89937 0.96280 1.20336 0.83619 0.98673 0.92803 0.89809 1.58804 1.66971 1.05003 1.03616 1.20515 1.00751 1.00040 0.92279 1.20228 0.93357 1.02395 0.99198 1.25522 0.98985 1.10932 0.99718 1.84004 1.08708 1.71677 1.03414 1.25288 0.94563 1.11670 1.03442 0.92979 0.97163 0.96261 0.85505 0.86380 0.84144 0.82259 0.82300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.67 15 2 C 0.06 1.86 5.47 -17.82 -0.10 1.76 15 3 Si 0.87 22.14 27.47 -169.99 -4.67 17.47 15 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 6 H -0.27 -6.58 6.54 56.52 0.37 -6.21 15 7 C -0.49 -14.17 9.39 -34.44 -0.32 -14.49 15 8 H 0.08 2.52 7.99 -52.49 -0.42 2.10 15 9 C 0.00 0.03 3.67 -27.88 -0.10 -0.07 15 10 C 0.16 3.13 3.01 -68.87 -0.21 2.92 15 11 H 0.08 1.68 8.09 -51.92 -0.42 1.26 15 12 N -0.82 -14.88 8.80 -5.65 -0.05 -14.93 15 13 C -0.12 -2.03 4.85 -106.25 -0.52 -2.54 15 14 C -0.12 -1.81 9.95 -41.21 -0.41 -2.22 15 15 C -0.22 -2.83 11.23 29.04 0.33 -2.51 15 16 S 0.06 0.77 23.34 -107.50 -2.51 -1.74 15 17 C -0.21 -3.25 10.42 29.04 0.30 -2.95 15 18 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 19 H 0.01 0.24 7.58 -51.93 -0.39 -0.15 15 20 H 0.02 0.47 7.19 -51.93 -0.37 0.10 15 21 H 0.33 5.65 7.73 -39.29 -0.30 5.34 15 22 H 0.33 5.01 9.06 -39.29 -0.36 4.65 15 23 H 0.14 1.93 8.06 -52.49 -0.42 1.51 15 24 H 0.16 1.64 8.06 -52.49 -0.42 1.21 15 25 H 0.16 2.24 7.18 -52.48 -0.38 1.86 15 LS Contribution 231.55 15.07 3.49 3.49 Total: -1.00 -31.29 231.55 -6.65 -37.94 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.66 Total: 5.55 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.03 Total: -20.10 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.72 Total: -42.60 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.29 -6.65 -37.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.111 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds