Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46899 * 109.47377 * 64.99374 * 10 9 7 13 13 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 14 14 C 1.38422 * 122.54249 * 99.73793 * 13 10 9 15 15 C 1.33383 * 114.92229 * 179.76114 * 14 13 10 16 16 S 1.75885 * 109.59055 * 0.47180 * 15 14 13 17 17 C 1.33390 * 122.53587 * 280.02083 * 13 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.00901 * 110.99243 * 60.00090 * 12 10 9 22 22 H 1.00899 * 111.00294 * 183.95639 * 12 10 9 23 23 H 1.07999 * 122.53697 * 359.97438 * 14 13 10 24 24 H 1.08001 * 125.20735 * 180.20854 * 15 14 13 25 25 H 1.08003 * 125.20215 * 359.97438 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6381 -3.2959 -1.2447 13 6 5.5229 -2.6381 0.1409 14 6 6.1657 -2.8673 1.3452 15 6 7.4979 -2.8390 1.2856 16 16 8.0073 -2.4942 -0.3622 17 6 6.3330 -2.4133 -0.8947 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 4.0322 -2.8162 -2.0400 22 1 3.9070 -4.2684 -1.2392 23 1 5.6292 -3.0582 2.2629 24 1 8.1621 -2.9988 2.1221 25 1 6.0102 -2.2127 -1.9056 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995061.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = 6.004515 kcal Electronic energy + Delta-G solvation = -10242.748654 eV Core-core repulsion = 8346.746315 eV Total energy + Delta-G solvation = -1896.002338 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.74639 -35.99820 -34.32200 -30.82208 -29.94583 -26.79977 -24.25876 -21.79201 -19.64561 -19.03446 -18.31529 -16.81120 -16.43892 -15.97595 -15.06926 -14.48502 -14.16833 -13.99191 -13.68498 -13.34975 -13.30052 -12.77165 -12.13825 -11.91297 -11.81696 -11.63175 -11.27981 -10.70739 -9.74471 -9.45592 -9.17237 -8.20026 -6.20108 0.09871 0.79379 1.06639 1.35718 1.37404 1.48631 1.79955 2.39895 3.13710 3.91032 4.06148 4.14561 4.43277 4.56083 4.69774 4.86853 5.08391 5.21498 5.37399 5.45367 5.66874 5.71428 6.36187 6.51851 6.80130 6.89125 7.41114 8.97284 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050848 B = 0.009799 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.527248 B = 2856.878107 C = 3086.956833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.038 0.962 9 C 0.007 3.993 10 C 0.169 3.831 11 H 0.068 0.932 12 N -0.832 5.832 13 C -0.137 4.137 14 C -0.146 4.146 15 C -0.207 4.207 16 S 0.108 5.892 17 C -0.226 4.226 18 H 0.263 0.737 19 H 0.013 0.987 20 H 0.017 0.983 21 H 0.339 0.661 22 H 0.341 0.659 23 H 0.145 0.855 24 H 0.191 0.809 25 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.968 -4.602 0.251 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.196 4.196 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.536 4.536 8 H 0.057 0.943 9 C -0.031 4.031 10 C 0.054 3.946 11 H 0.087 0.913 12 N -0.361 5.361 13 C -0.152 4.152 14 C -0.177 4.177 15 C -0.342 4.342 16 S 0.372 5.628 17 C -0.362 4.362 18 H 0.071 0.929 19 H 0.032 0.968 20 H 0.035 0.965 21 H 0.153 0.847 22 H 0.154 0.846 23 H 0.163 0.837 24 H 0.208 0.792 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 18.492 -4.154 -0.264 18.954 hybrid contribution -0.678 0.465 0.541 0.984 sum 17.814 -3.689 0.276 18.194 Atomic orbital electron populations 1.70072 1.08128 1.27632 1.53933 1.25929 0.95523 1.03000 0.95108 0.85758 0.79373 0.79150 0.78903 1.19511 1.21162 1.17577 1.21302 0.91384 0.92990 1.47892 0.94334 1.19496 0.94470 0.93157 0.96008 1.19908 0.86023 0.95782 0.92837 0.91349 1.58706 1.67710 1.06192 1.03496 1.20185 0.98778 1.02489 0.93749 1.20297 0.94355 1.04130 0.98925 1.25922 0.98650 1.08716 1.00884 1.83880 1.06054 1.70220 1.02696 1.25504 0.96296 1.10845 1.03521 0.92857 0.96842 0.96466 0.84721 0.84577 0.83742 0.79221 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.48 13.96 21.45 0.30 -61.18 15 2 C 0.00 -0.02 5.47 84.66 0.46 0.45 15 3 Si 0.94 45.57 27.47 68.60 1.88 47.45 15 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 15 6 H -0.25 -11.42 6.54 99.48 0.65 -10.77 15 7 C -0.50 -29.13 9.39 25.60 0.24 -28.89 15 8 H 0.04 2.52 7.99 -2.91 -0.02 2.49 15 9 C 0.01 0.31 3.67 29.85 0.11 0.42 15 10 C 0.17 6.58 3.01 44.17 0.13 6.71 15 11 H 0.07 2.82 8.09 -2.38 -0.02 2.80 15 12 N -0.83 -30.21 8.80 -171.80 -1.51 -31.72 15 13 C -0.14 -4.37 4.85 -20.92 -0.10 -4.47 15 14 C -0.15 -4.09 9.95 21.21 0.21 -3.88 15 15 C -0.21 -4.68 11.23 66.72 0.75 -3.93 15 16 S 0.11 2.43 23.34 -56.49 -1.32 1.12 15 17 C -0.23 -6.32 10.42 66.72 0.69 -5.63 15 18 H 0.26 15.81 8.31 -92.71 -0.77 15.04 15 19 H 0.01 0.62 7.58 -2.38 -0.02 0.61 15 20 H 0.02 0.82 7.19 -2.39 -0.02 0.80 15 21 H 0.34 11.32 7.73 -89.69 -0.69 10.62 15 22 H 0.34 10.37 9.06 -89.69 -0.81 9.56 15 23 H 0.14 3.79 8.06 -2.91 -0.02 3.77 15 24 H 0.19 3.04 8.06 -2.91 -0.02 3.02 15 25 H 0.17 4.29 7.18 -2.91 -0.02 4.27 15 Total: -1.00 -67.54 231.55 1.50 -66.05 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.36 Total: 17.50 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 2.50 Total: -39.22 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -1.21 Total: -92.90 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.32 Total: 1.12 kcal Total: -67.54 1.50 -66.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995061.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.054 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds