Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48502 * 109.47396 * 270.00134 * 3 2 1 5 5 H 1.48503 * 109.47398 * 30.00331 * 3 2 1 6 6 H 1.48506 * 109.47022 * 150.00188 * 3 2 1 7 7 C 1.37870 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47288 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47066 * 54.99642 * 10 9 7 12 12 N 1.46898 * 109.46971 * 294.99971 * 10 9 7 13 13 C 1.50698 * 109.47114 * 175.00207 * 10 9 7 14 14 C 1.38433 * 122.53678 * 260.00083 * 13 10 9 15 15 C 1.33388 * 114.91766 * 180.02562 * 14 13 10 16 16 S 1.75879 * 109.59837 * 0.02562 * 15 14 13 17 17 C 1.33389 * 122.54300 * 80.02006 * 13 10 9 18 18 H 0.97000 * 119.99371 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47169 * 59.99357 * 9 7 2 20 20 H 1.09003 * 109.47019 * 300.00101 * 9 7 2 21 21 H 1.00900 * 111.00066 * 300.00116 * 12 10 9 22 22 H 1.00896 * 111.00362 * 63.95042 * 12 10 9 23 23 H 1.08000 * 122.53671 * 0.04399 * 14 13 10 24 24 H 1.08006 * 125.20143 * 180.02562 * 15 14 13 25 25 H 1.07995 * 125.20209 * 0.24679 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 1 3.5865 -3.1758 -0.8424 12 7 3.6334 -3.2930 1.2545 13 6 5.5234 -2.6384 -0.1254 14 6 6.1708 -2.8755 -1.3258 15 6 7.5027 -2.8419 -1.2622 16 16 8.0060 -2.4954 0.3871 17 6 6.3296 -2.4121 0.9129 18 1 -0.4849 0.8401 0.0004 19 1 3.8752 -0.6804 0.8888 20 1 3.8745 -0.6800 -0.8911 21 1 4.0245 -2.8115 2.0503 22 1 2.6297 -3.3621 1.3313 23 1 5.6377 -3.0725 -2.2442 24 1 8.1701 -3.0028 -2.0960 25 1 6.0031 -2.2134 1.9230 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995064.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 2.753872 kcal Electronic energy + Delta-G solvation = -10250.106012 eV Core-core repulsion = 8353.962715 eV Total energy + Delta-G solvation = -1896.143297 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 197.057 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.65376 -36.20446 -34.34124 -30.54373 -30.00169 -26.87625 -24.22752 -21.87233 -19.66918 -19.17198 -18.33696 -16.53841 -16.26543 -15.96658 -15.10458 -14.68013 -14.18319 -13.83763 -13.76347 -13.33802 -13.19665 -12.77275 -12.46521 -12.07628 -11.86355 -11.66308 -11.22058 -10.81744 -9.67980 -9.52068 -9.09384 -8.32669 -6.36482 0.18368 0.85319 1.12449 1.31386 1.33147 1.44057 1.87721 2.31578 3.02388 3.84901 4.16083 4.25353 4.50919 4.60293 4.73512 4.82979 5.08780 5.19341 5.30401 5.49121 5.59477 5.74828 6.20145 6.36466 6.68197 6.70925 7.28766 8.83069 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.050994 B = 0.009798 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.947709 B = 2856.918016 C = 3085.070515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.526 4.526 8 H 0.044 0.956 9 C -0.028 4.028 10 C 0.162 3.838 11 H 0.068 0.932 12 N -0.831 5.831 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.207 4.207 16 S 0.103 5.897 17 C -0.217 4.217 18 H 0.266 0.734 19 H 0.016 0.984 20 H 0.013 0.987 21 H 0.335 0.665 22 H 0.344 0.656 23 H 0.145 0.855 24 H 0.192 0.808 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.955 -3.207 -0.047 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.062 0.938 9 C -0.068 4.068 10 C 0.048 3.952 11 H 0.086 0.914 12 N -0.359 5.359 13 C -0.110 4.110 14 C -0.178 4.178 15 C -0.342 4.342 16 S 0.366 5.634 17 C -0.353 4.353 18 H 0.075 0.925 19 H 0.035 0.965 20 H 0.031 0.969 21 H 0.147 0.853 22 H 0.157 0.843 23 H 0.163 0.837 24 H 0.209 0.791 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 17.624 -3.582 0.393 17.988 hybrid contribution -2.241 1.557 -0.520 2.778 sum 15.383 -2.025 -0.126 15.516 Atomic orbital electron populations 1.70050 1.08034 1.28055 1.52394 1.25869 0.95454 1.03030 0.94231 0.85764 0.79352 0.79121 0.79004 1.19523 1.20955 1.17749 1.21345 0.91276 0.93364 1.50377 0.93795 1.20213 0.94600 0.95480 0.96480 1.19812 0.88988 0.93043 0.93377 0.91426 1.59207 1.16854 1.56322 1.03512 1.19099 0.96269 1.02005 0.93659 1.20250 0.94401 1.04255 0.98890 1.25860 0.98533 1.08981 1.00796 1.83822 1.06154 1.70552 1.02882 1.25458 0.96019 1.10553 1.03259 0.92501 0.96523 0.96893 0.85275 0.84346 0.83721 0.79101 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 13.96 21.45 0.30 -57.88 15 2 C 0.01 0.68 5.47 84.65 0.46 1.14 15 3 Si 0.94 44.31 27.47 68.60 1.88 46.20 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 15 6 H -0.25 -11.28 6.54 99.48 0.65 -10.63 15 7 C -0.53 -29.19 9.10 25.60 0.23 -28.96 15 8 H 0.04 2.64 7.39 -2.91 -0.02 2.62 15 9 C -0.03 -1.31 3.67 29.85 0.11 -1.20 15 10 C 0.16 6.42 3.07 44.17 0.14 6.56 15 11 H 0.07 2.82 8.08 -2.39 -0.02 2.81 15 12 N -0.83 -30.85 9.04 -171.81 -1.55 -32.41 15 13 C -0.10 -3.32 4.86 -20.92 -0.10 -3.42 15 14 C -0.15 -4.35 9.95 21.22 0.21 -4.14 15 15 C -0.21 -4.96 11.23 66.72 0.75 -4.21 15 16 S 0.10 2.48 23.34 -56.49 -1.32 1.16 15 17 C -0.22 -6.58 10.42 66.72 0.70 -5.89 15 18 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 19 H 0.02 0.76 7.20 -2.39 -0.02 0.75 15 20 H 0.01 0.60 7.57 -2.39 -0.02 0.58 15 21 H 0.34 11.45 7.73 -89.69 -0.69 10.76 15 22 H 0.34 13.71 7.90 -89.70 -0.71 13.00 15 23 H 0.15 3.97 8.06 -2.91 -0.02 3.94 15 24 H 0.19 3.24 8.06 -2.91 -0.02 3.22 15 25 H 0.16 4.64 7.18 -2.91 -0.02 4.62 15 Total: -1.00 -62.35 229.82 1.55 -60.79 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.25 Total: 22.26 kcal Atomic # 6 Polarization: -42.62 SS G_CDS: 2.49 Total: -40.13 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -1.25 Total: -90.29 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.32 Total: 1.16 kcal Total: -62.35 1.55 -60.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995064.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.545 kcal (2) G-P(sol) polarization free energy of solvation -62.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds