Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34884 * 116.99969 * 2 1 4 4 O 1.21576 * 120.00130 * 0.02562 * 3 2 1 5 5 C 1.47037 * 119.99804 * 180.02562 * 3 2 1 6 6 N 1.34485 * 126.70184 * 359.97438 * 5 3 2 7 7 C 1.30407 * 109.16044 * 180.02562 * 6 5 3 8 8 O 1.33976 * 110.19071 * 0.25935 * 7 6 5 9 9 C 1.35338 * 108.03479 * 359.57189 * 8 7 6 10 10 C 1.39158 * 126.99300 * 180.15154 * 9 8 7 11 11 H 1.08006 * 119.99741 * 174.15306 * 10 9 8 12 12 C 1.40715 * 120.00465 * 354.15664 * 10 9 8 13 13 N 1.30439 * 120.00027 * 5.92033 * 12 10 9 14 14 Si 1.86803 * 120.00450 * 185.92415 * 12 10 9 15 15 H 1.48497 * 109.47122 * 94.98066 * 14 12 10 16 16 H 1.48498 * 109.47103 * 214.98340 * 14 12 10 17 17 H 1.48498 * 109.46677 * 334.98186 * 14 12 10 18 18 H 1.09003 * 109.46784 * 299.99178 * 1 2 3 19 19 H 1.08994 * 109.47262 * 59.99152 * 1 2 3 20 20 H 1.08998 * 109.46933 * 180.02562 * 1 2 3 21 21 H 1.07997 * 124.90425 * 180.02562 * 7 6 5 22 22 H 0.96994 * 120.00485 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4023 2.2215 0.0005 5 6 3.5328 1.2787 -0.0006 6 7 4.3918 0.2440 -0.0006 7 6 5.6130 0.7016 -0.0007 8 8 5.6048 2.0413 0.0051 9 6 4.3154 2.4525 -0.0007 10 6 3.8554 3.7658 -0.0006 11 1 2.7991 3.9679 -0.1009 12 6 4.7662 4.8304 0.1300 13 7 6.0490 4.5944 0.1348 14 14 4.1382 6.5819 0.2965 15 1 4.0547 6.9432 1.7344 16 1 5.0700 7.5095 -0.3938 17 1 2.7907 6.6851 -0.3189 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5139 -0.8898 20 1 -0.3633 -1.0277 0.0005 21 1 6.5024 0.0890 -0.0011 22 1 6.6768 5.3282 0.2252 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057525.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = -113.239986 kcal Electronic energy + Delta-G solvation = -12184.729200 eV Core-core repulsion = 9704.970067 eV Total energy + Delta-G solvation = -2479.759134 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.07628 -40.71754 -37.09383 -36.12787 -34.84728 -31.70113 -29.03285 -27.37874 -24.42257 -22.99407 -21.43328 -19.68872 -18.60931 -17.73621 -17.22642 -17.16988 -16.46176 -16.07562 -15.26264 -14.55986 -14.13348 -14.04839 -13.38474 -13.18620 -12.98619 -12.83276 -12.06464 -11.79178 -11.61192 -11.48453 -11.33687 -11.02452 -9.80779 -9.13887 -6.98976 0.66360 1.32704 1.33697 1.52224 1.63733 2.05493 2.10684 2.47159 2.79707 2.97581 3.87323 4.38424 4.40905 4.56994 4.68096 4.77011 4.83835 5.30107 5.51680 5.94539 6.01216 6.21764 6.27485 7.07243 7.50018 7.85741 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.038202 B = 0.013520 C = 0.010046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.770196 B = 2070.470852 C = 2786.384692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.549 3.451 4 O -0.565 6.565 5 C -0.301 4.301 6 N -0.457 5.457 7 C 0.067 3.933 8 O -0.220 6.220 9 C 0.197 3.803 10 C -0.404 4.404 11 H 0.123 0.877 12 C 0.023 3.977 13 N -0.760 5.760 14 Si 1.011 2.989 15 H -0.251 1.251 16 H -0.247 1.247 17 H -0.256 1.256 18 H 0.057 0.943 19 H 0.057 0.943 20 H 0.132 0.868 21 H 0.269 0.731 22 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 0.851 0.314 2.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.461 6.461 5 C -0.418 4.418 6 N -0.185 5.185 7 C -0.161 4.161 8 O -0.112 6.112 9 C 0.141 3.859 10 C -0.429 4.429 11 H 0.141 0.859 12 C -0.202 4.202 13 N -0.383 5.383 14 Si 0.827 3.173 15 H -0.175 1.175 16 H -0.170 1.170 17 H -0.179 1.179 18 H 0.076 0.924 19 H 0.076 0.924 20 H 0.151 0.849 21 H 0.284 0.716 22 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.095 0.491 0.318 2.176 hybrid contribution 0.007 0.936 0.046 0.937 sum -2.089 1.427 0.364 2.556 Atomic orbital electron populations 1.23450 0.75513 1.05173 1.02057 1.86629 1.24331 1.32333 1.85283 1.19400 0.86619 0.80934 0.72741 1.90652 1.66440 1.36487 1.52510 1.19981 0.90946 0.89767 1.41073 1.69586 1.01043 1.33226 1.14663 1.27921 0.97754 0.80046 1.10402 1.84775 1.27335 1.23742 1.75301 1.20592 0.79829 0.94502 0.90935 1.19823 0.97684 0.87214 1.38197 0.85890 1.27552 0.94178 1.07622 0.90824 1.69599 1.04104 1.38837 1.25773 0.84753 0.79887 0.72151 0.80504 1.17538 1.17017 1.17920 0.92435 0.92430 0.84944 0.71555 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 10.57 113.37 1.20 2.23 14 2 O -0.37 -17.05 10.58 -57.98 -0.61 -17.66 14 3 C 0.55 29.54 7.95 70.13 0.56 30.10 14 4 O -0.57 -31.15 14.78 19.58 0.29 -30.86 14 5 C -0.30 -17.14 7.16 41.74 0.30 -16.84 14 6 N -0.46 -24.12 11.27 -302.36 -3.41 -27.53 14 7 C 0.07 3.15 13.14 130.45 1.71 4.86 14 8 O -0.22 -11.88 9.17 -9.90 -0.09 -11.97 14 9 C 0.20 11.30 6.86 23.19 0.16 11.46 14 10 C -0.40 -21.95 8.94 23.10 0.21 -21.74 14 11 H 0.12 6.80 6.19 -2.91 -0.02 6.78 14 12 C 0.02 1.09 5.50 85.51 0.47 1.56 14 13 N -0.76 -36.43 12.08 21.96 0.27 -36.17 14 14 Si 1.01 34.82 29.57 68.60 2.03 36.85 14 15 H -0.25 -8.26 7.11 99.48 0.71 -7.55 14 16 H -0.25 -7.57 7.11 99.48 0.71 -6.86 14 17 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 18 H 0.06 1.83 8.14 -2.39 -0.02 1.81 14 19 H 0.06 1.83 8.14 -2.39 -0.02 1.81 14 20 H 0.13 3.11 8.14 -2.39 -0.02 3.10 14 21 H 0.27 8.95 8.06 -2.91 -0.02 8.93 14 22 H 0.31 12.77 8.29 -92.71 -0.77 12.00 14 Total: -1.00 -68.28 215.82 4.33 -63.95 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.25 Total: 11.75 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 4.60 Total: 11.63 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -3.14 Total: -63.69 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -0.41 Total: -60.49 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -68.28 4.33 -63.95 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057525.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.286 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds