Wall clock time and date at job start Mon Mar 30 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48493 * 109.47165 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46758 * 30.00101 * 3 2 1 6 6 H 1.48496 * 109.47002 * 149.99773 * 3 2 1 7 7 C 1.37877 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47537 * 179.97438 * 9 7 2 11 11 C 1.41257 * 126.69773 * 125.27496 * 10 9 7 12 12 C 1.36889 * 103.84033 * 180.13970 * 11 10 9 13 13 C 1.47373 * 126.95499 * 179.87568 * 12 11 10 14 14 O 1.21507 * 119.99665 * 359.71598 * 13 12 11 15 15 O 1.34778 * 120.00335 * 179.71521 * 13 12 11 16 16 O 1.34665 * 106.09394 * 359.61938 * 12 11 10 17 17 N 1.20888 * 111.46610 * 0.25987 * 16 12 11 18 18 H 0.97002 * 120.00257 * 0.02562 * 1 2 3 19 19 H 1.09008 * 109.46748 * 59.99818 * 9 7 2 20 20 H 1.08997 * 109.47307 * 300.00952 * 9 7 2 21 21 H 1.07997 * 128.08307 * 0.02562 * 11 10 9 22 22 H 0.96700 * 117.00264 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.2824 -4.7116 0.9223 12 6 3.3372 -5.4690 0.4889 13 6 3.8426 -6.7135 1.0953 14 8 3.3110 -7.1637 2.0908 15 8 4.8944 -7.3522 0.5455 16 8 3.8160 -4.8498 -0.6069 17 7 3.1896 -3.8466 -0.8574 18 1 -0.4850 0.8400 -0.0004 19 1 0.6240 -2.5567 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 1.6412 -4.8878 1.7733 22 1 5.1898 -8.1649 0.9785 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260126528.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:28 Heat of formation + Delta-G solvation = -58.473478 kcal Electronic energy + Delta-G solvation = -11722.318380 eV Core-core repulsion = 9244.934100 eV Total energy + Delta-G solvation = -2477.384280 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.052 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.07185 -41.15994 -37.32788 -36.40069 -34.57141 -33.20150 -30.34740 -26.36411 -25.64870 -23.90184 -21.54137 -19.37248 -19.04053 -18.80673 -18.38001 -16.98797 -16.60180 -16.51644 -14.97440 -14.76708 -14.47833 -14.24375 -13.86235 -12.94122 -12.79307 -12.75186 -12.45631 -12.06900 -11.99555 -11.72112 -11.03255 -10.82312 -10.57930 -8.29051 -6.40312 -0.42076 1.10435 1.34987 1.39172 1.40162 1.51192 1.59362 2.34096 2.39815 3.04160 3.25275 3.74243 4.00394 4.21394 4.54614 4.89185 5.19949 5.28722 5.34024 5.63984 6.01848 6.67386 6.78412 7.21568 7.28748 8.82094 Molecular weight = 197.05amu Principal moments of inertia in cm(-1) A = 0.074840 B = 0.007666 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.041894 B = 3651.716623 C = 3784.667362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.090 3.910 10 C 0.027 3.973 11 C -0.131 4.131 12 C -0.095 4.095 13 C 0.600 3.400 14 O -0.509 6.509 15 O -0.489 6.489 16 O 0.136 5.864 17 N -0.361 5.361 18 H 0.269 0.731 19 H 0.021 0.979 20 H 0.041 0.959 21 H 0.204 0.796 22 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.429 -12.000 2.274 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.053 3.947 10 C -0.129 4.129 11 C -0.152 4.152 12 C -0.160 4.160 13 C 0.441 3.559 14 O -0.398 6.398 15 O -0.303 6.303 16 O 0.058 5.942 17 N -0.059 5.059 18 H 0.078 0.922 19 H 0.039 0.961 20 H 0.059 0.941 21 H 0.221 0.779 22 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 7.410 -10.994 1.292 13.321 hybrid contribution -0.112 0.215 0.818 0.853 sum 7.297 -10.780 2.109 13.187 Atomic orbital electron populations 1.70027 1.07374 1.28336 1.50455 1.25834 0.95848 1.02958 0.94215 0.85421 0.78539 0.78417 0.78539 1.19865 1.19888 1.19371 1.21269 0.92975 0.91257 1.52181 0.93140 1.17612 0.91241 0.87878 0.98011 1.24262 0.97286 0.99000 0.92343 1.23169 0.98090 0.92229 1.01696 1.22989 1.00207 0.98343 0.94430 1.18280 0.77672 0.80206 0.79693 1.90981 1.58686 1.65249 1.24917 1.84588 1.44598 1.43401 1.57740 1.85055 1.45671 1.27017 1.36434 1.73726 1.08111 1.00931 1.23129 0.92188 0.96057 0.94051 0.77942 0.68982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 13.29 21.45 0.28 -53.68 14 2 C 0.01 0.61 5.46 84.66 0.46 1.07 14 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 14 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 14 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 14 7 C -0.54 -30.67 9.08 25.60 0.23 -30.43 14 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 14 9 C 0.09 4.69 5.57 29.10 0.16 4.85 14 10 C 0.03 1.18 6.52 43.55 0.28 1.46 14 11 C -0.13 -4.58 10.91 22.70 0.25 -4.33 14 12 C -0.09 -3.00 7.37 24.36 0.18 -2.82 14 13 C 0.60 14.81 8.33 70.23 0.59 15.39 14 14 O -0.51 -14.25 17.70 19.81 0.35 -13.90 14 15 O -0.49 -8.16 13.44 -56.19 -0.76 -8.92 14 16 O 0.14 4.92 11.23 65.59 0.74 5.65 14 17 N -0.36 -15.73 12.02 -48.85 -0.59 -16.32 14 18 H 0.27 14.72 8.31 -92.71 -0.77 13.95 14 19 H 0.02 1.19 8.14 -2.38 -0.02 1.17 14 20 H 0.04 2.15 8.14 -2.39 -0.02 2.13 14 21 H 0.20 5.99 8.06 -2.91 -0.02 5.97 14 22 H 0.45 2.07 9.11 -74.06 -0.67 1.40 14 Total: -1.00 -67.18 221.27 4.80 -62.38 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: 0.59 Total: -6.49 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 2.15 Total: -14.81 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -0.30 Total: -69.99 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.33 Total: -17.17 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.18 4.80 -62.38 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260126528.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.903 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds