Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34914 * 119.96829 * 2 1 4 4 O 1.21728 * 120.41432 * 359.97438 * 3 2 1 5 5 C 1.46575 * 119.16791 * 180.02562 * 3 2 1 6 6 N 1.30647 * 119.03004 * 359.97438 * 5 3 2 7 7 N 1.39998 * 119.83911 * 0.02562 * 6 5 3 8 8 C 1.36765 * 119.55964 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99319 * 179.97438 * 8 7 6 10 10 C 1.39201 * 120.00128 * 359.97438 * 8 7 6 11 11 N 1.31167 * 120.00225 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99808 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99981 * 12 10 8 14 14 H 1.48498 * 109.47011 * 209.99839 * 12 10 8 15 15 H 1.48499 * 109.47134 * 329.99461 * 12 10 8 16 16 C 1.34483 * 120.87205 * 0.25124 * 7 6 5 17 17 O 1.21559 * 119.48237 * 179.72137 * 16 7 6 18 18 H 1.09000 * 109.47419 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46892 * 120.00103 * 1 2 3 20 20 H 1.08998 * 109.47056 * 240.00117 * 1 2 3 21 21 H 1.08000 * 120.48092 * 179.97438 * 5 3 2 22 22 H 0.96999 * 120.00178 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1688 0.0000 4 8 1.5373 2.2270 -0.0005 5 6 3.6045 1.1483 -0.0006 6 7 4.2225 -0.0028 -0.0006 7 7 3.4820 -1.1909 -0.0005 8 6 4.1348 -2.3927 -0.0011 9 1 3.5706 -3.3136 -0.0006 10 6 5.5264 -2.4290 -0.0021 11 7 6.2116 -1.3105 -0.0032 12 14 6.4179 -4.0705 -0.0036 13 1 6.6530 -4.5049 -1.4040 14 1 7.7201 -3.9271 0.6955 15 1 5.5892 -5.0845 0.6967 16 6 2.1375 -1.1661 -0.0056 17 8 1.5198 -2.2130 -0.0106 18 1 -0.3634 1.0276 -0.0005 19 1 -0.3633 -0.5139 -0.8900 20 1 -0.3633 -0.5138 0.8900 21 1 4.1653 2.0713 -0.0010 22 1 7.1813 -1.3358 -0.0043 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178666.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -9.963524 kcal Electronic energy + Delta-G solvation = -12499.768187 eV Core-core repulsion = 10056.780208 eV Total energy + Delta-G solvation = -2442.987979 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.75981 -39.85102 -38.12122 -36.28720 -34.81717 -32.75461 -29.21204 -27.46130 -25.05346 -24.45608 -20.85194 -20.43510 -18.00312 -17.92125 -17.75466 -16.94929 -15.96443 -15.64952 -15.39360 -15.03301 -14.53561 -13.79025 -13.39715 -13.37773 -13.10634 -12.72148 -12.66624 -12.07107 -11.43206 -11.25260 -10.85381 -10.65920 -10.12050 -8.40723 -6.22652 0.09908 0.94134 1.16701 1.50738 1.52954 1.62448 1.75590 2.35823 2.42925 3.09285 3.26023 4.17190 4.36203 4.37125 4.53133 4.67376 4.85656 5.27801 5.51331 5.79217 6.22129 6.48564 6.75222 7.18309 7.41611 8.54990 Molecular weight = 197.06amu Principal moments of inertia in cm(-1) A = 0.059257 B = 0.012916 C = 0.010666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.400736 B = 2167.312217 C = 2624.565405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.548 5.548 3 C 0.502 3.498 4 O -0.551 6.551 5 C -0.071 4.071 6 N -0.117 5.117 7 N -0.265 5.265 8 C -0.349 4.349 9 H 0.119 0.881 10 C 0.008 3.992 11 N -0.816 5.816 12 Si 1.010 2.990 13 H -0.265 1.265 14 H -0.265 1.265 15 H -0.263 1.263 16 C 0.604 3.396 17 O -0.597 6.597 18 H 0.109 0.891 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.232 0.768 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 1.131 0.015 1.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.293 5.293 3 C 0.295 3.705 4 O -0.427 6.427 5 C -0.271 4.271 6 N 0.061 4.939 7 N -0.075 5.075 8 C -0.478 4.478 9 H 0.137 0.863 10 C -0.202 4.202 11 N -0.448 5.448 12 Si 0.830 3.170 13 H -0.190 1.190 14 H -0.190 1.190 15 H -0.187 1.187 16 C 0.308 3.692 17 O -0.475 6.475 18 H 0.128 0.872 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.248 0.752 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.285 0.797 0.020 1.513 hybrid contribution -0.488 -0.205 -0.015 0.529 sum -1.773 0.592 0.005 1.869 Atomic orbital electron populations 1.21982 0.74743 1.05292 1.04229 1.46651 1.11370 1.05918 1.65400 1.19762 0.90121 0.83056 0.77576 1.90741 1.70883 1.29313 1.51749 1.27176 0.89913 0.98768 1.11263 1.76587 1.21204 0.91152 1.04998 1.45157 1.00870 1.05963 1.55476 1.20233 0.90866 0.82117 1.54619 0.86339 1.26442 0.96100 1.03160 0.94546 1.70193 1.08383 1.28016 1.38168 0.84706 0.77415 0.75647 0.79208 1.18991 1.18952 1.18749 1.16685 0.83137 0.84281 0.85066 1.90778 1.66390 1.30858 1.59451 0.87219 0.90000 0.89981 0.75170 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.01 127.77 1.28 3.89 14 2 N -0.55 -23.44 2.96 -800.86 -2.37 -25.81 14 3 C 0.50 20.97 7.62 86.40 0.66 21.63 14 4 O -0.55 -23.21 16.49 -4.44 -0.07 -23.28 14 5 C -0.07 -2.91 11.60 87.05 1.01 -1.90 14 6 N -0.12 -5.70 8.84 -52.41 -0.46 -6.17 14 7 N -0.26 -13.94 3.62 -321.32 -1.16 -15.10 14 8 C -0.35 -18.62 9.61 84.16 0.81 -17.81 14 9 H 0.12 6.38 7.09 -2.91 -0.02 6.36 14 10 C 0.01 0.41 5.49 85.02 0.47 0.88 14 11 N -0.82 -40.88 11.26 21.70 0.24 -40.63 14 12 Si 1.01 37.86 29.55 68.60 2.03 39.89 14 13 H -0.26 -9.62 7.11 99.48 0.71 -8.91 14 14 H -0.27 -9.36 7.11 99.48 0.71 -8.66 14 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 14 16 C 0.60 30.21 8.12 179.20 1.46 31.67 14 17 O -0.60 -31.81 15.76 -3.90 -0.06 -31.87 14 18 H 0.11 3.28 6.92 -2.39 -0.02 3.27 14 19 H 0.08 2.56 8.14 -2.39 -0.02 2.54 14 20 H 0.08 2.56 8.14 -2.39 -0.02 2.54 14 21 H 0.23 7.44 8.06 -2.91 -0.02 7.41 14 22 H 0.28 12.82 8.30 -92.71 -0.77 12.05 14 Total: -1.00 -62.18 208.92 5.07 -57.11 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.25 Total: 7.53 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 5.68 Total: 38.35 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -3.76 Total: -87.72 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.13 Total: -55.15 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -62.18 5.07 -57.11 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178666.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.144 kcal (2) G-P(sol) polarization free energy of solvation -62.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds