Wall clock time and date at job start Mon Mar 30 2020 02:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47166 * 2 1 4 4 N 1.29908 * 124.97489 * 89.99597 * 3 2 1 5 5 C 1.36254 * 108.72416 * 179.97438 * 4 3 2 6 6 C 1.40906 * 126.74326 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00395 * 180.02562 * 6 5 4 8 8 C 1.39584 * 119.99833 * 359.74237 * 6 5 4 9 9 N 1.31164 * 119.99939 * 0.28712 * 8 6 5 10 10 Si 1.86803 * 119.99975 * 180.27646 * 8 6 5 11 11 H 1.48498 * 109.46811 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.46875 * 120.00394 * 10 8 6 13 13 H 1.48498 * 109.47283 * 240.00440 * 10 8 6 14 14 C 1.39900 * 106.51586 * 0.24488 * 5 4 3 15 15 O 1.35136 * 126.83952 * 179.75734 * 14 5 4 16 16 C 1.42902 * 116.99801 * 180.02562 * 15 14 5 17 17 O 1.34242 * 124.97533 * 269.96028 * 3 2 1 18 18 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47439 * 299.99966 * 1 2 3 20 20 H 1.08999 * 109.47121 * 59.99869 * 1 2 3 21 21 H 1.08994 * 109.46835 * 239.99669 * 2 1 3 22 22 H 1.08999 * 109.47121 * 120.00131 * 2 1 3 23 23 H 0.96996 * 120.00182 * 179.97438 * 9 8 6 24 24 H 1.09006 * 109.46743 * 179.97438 * 16 15 14 25 25 H 1.09000 * 109.46960 * 299.99480 * 16 15 14 26 26 H 1.08997 * 109.47106 * 59.99895 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2805 2.1229 1.0645 5 6 2.7171 3.3560 0.6832 6 6 3.0919 4.4170 1.5313 7 1 3.4234 5.3543 1.1095 8 6 3.0290 4.2586 2.9167 9 7 2.6264 3.1202 3.4290 10 14 3.5184 5.6678 4.0410 11 1 3.9321 6.8345 3.2209 12 1 2.3619 6.0465 4.8920 13 1 4.6497 5.2426 4.9039 14 6 2.7143 3.3638 -0.7158 15 8 3.0705 4.3890 -1.5210 16 6 2.9863 4.1666 -2.9301 17 8 2.2896 2.1460 -1.1000 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 2.5830 3.0100 4.3917 24 1 3.2993 5.0667 -3.4593 25 1 3.6374 3.3372 -3.2066 26 1 1.9578 3.9265 -3.1992 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353193.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:08 Heat of formation + Delta-G solvation = -53.269801 kcal Electronic energy + Delta-G solvation = -12463.210167 eV Core-core repulsion = 10121.884630 eV Total energy + Delta-G solvation = -2341.325537 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.21026 -38.96084 -36.10689 -34.87467 -33.78220 -30.22394 -28.24000 -26.84771 -24.38974 -22.75976 -21.27504 -19.41299 -18.72023 -17.56686 -16.83987 -16.19570 -16.01462 -15.64221 -15.02339 -14.58068 -14.17749 -13.39070 -13.00847 -12.88177 -12.78822 -12.67188 -12.30844 -12.15635 -11.93752 -11.84587 -11.82026 -10.77389 -10.75077 -8.89380 -8.40128 -6.20524 1.00179 1.40901 1.46033 1.57781 1.88642 2.29922 2.30206 2.89557 3.42341 3.72800 4.25058 4.32445 4.37976 4.40619 4.57442 4.61218 4.82218 4.97709 5.14721 5.25556 5.34752 5.55934 5.68925 6.29195 6.44104 6.88590 6.99306 7.65979 8.57741 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.013792 C = 0.009827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.682162 B = 2029.703751 C = 2848.542159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.010 4.010 3 C 0.132 3.868 4 N -0.460 5.460 5 C 0.136 3.864 6 C -0.478 4.478 7 H 0.077 0.923 8 C 0.025 3.975 9 N -0.805 5.805 10 Si 0.992 3.008 11 H -0.260 1.260 12 H -0.264 1.264 13 H -0.264 1.264 14 C -0.085 4.085 15 O -0.280 6.280 16 C 0.028 3.972 17 O -0.247 6.247 18 H 0.102 0.898 19 H 0.038 0.962 20 H 0.050 0.950 21 H 0.107 0.893 22 H 0.101 0.899 23 H 0.278 0.722 24 H 0.128 0.872 25 H 0.048 0.952 26 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -3.155 -5.761 6.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 C -0.074 4.074 4 N -0.194 5.194 5 C 0.019 3.981 6 C -0.511 4.511 7 H 0.095 0.905 8 C -0.191 4.191 9 N -0.432 5.432 10 Si 0.813 3.187 11 H -0.184 1.184 12 H -0.189 1.189 13 H -0.189 1.189 14 C -0.177 4.177 15 O -0.195 6.195 16 C -0.067 4.067 17 O -0.141 6.141 18 H 0.121 0.879 19 H 0.058 0.942 20 H 0.070 0.930 21 H 0.125 0.875 22 H 0.119 0.881 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.066 0.934 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.849 -3.338 -4.972 6.268 hybrid contribution 0.304 0.828 -0.586 1.059 sum -1.545 -2.510 -5.559 6.292 Atomic orbital electron populations 1.21705 0.92717 1.03739 1.01361 1.20064 0.97161 0.82358 1.05183 1.26853 1.03891 0.98163 0.78496 1.71283 1.16687 1.03660 1.27726 1.18995 0.99968 0.92696 0.86460 1.18717 1.42971 0.98034 0.91354 0.90454 1.26801 0.93081 0.99480 0.99712 1.70237 1.34308 1.25296 1.13360 0.85016 0.78708 0.77641 0.77356 1.18357 1.18920 1.18871 1.21436 1.23126 0.82826 0.90354 1.86105 1.84654 1.30069 1.18706 1.23047 1.01410 1.04138 0.78129 1.83832 1.68794 1.23052 1.38404 0.87892 0.94242 0.93039 0.87493 0.88072 0.91228 0.85345 0.93360 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.90 71.98 0.71 -3.25 15 2 C -0.01 -0.33 6.56 29.85 0.20 -0.13 15 3 C 0.13 6.48 7.51 88.39 0.66 7.14 15 4 N -0.46 -26.98 9.56 -295.41 -2.82 -29.80 15 5 C 0.14 8.39 6.72 39.51 0.27 8.66 15 6 C -0.48 -29.26 9.36 23.25 0.22 -29.04 15 7 H 0.08 4.62 7.84 -2.91 -0.02 4.60 15 8 C 0.02 1.38 5.49 85.12 0.47 1.85 15 9 N -0.81 -46.94 11.96 21.78 0.26 -46.68 15 10 Si 0.99 42.15 29.56 68.60 2.03 44.18 15 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 12 H -0.26 -10.63 7.11 99.48 0.71 -9.93 15 13 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 14 C -0.09 -4.76 8.04 68.22 0.55 -4.21 15 15 O -0.28 -13.87 10.53 -62.08 -0.65 -14.52 15 16 C 0.03 0.95 10.80 113.37 1.22 2.18 15 17 O -0.25 -12.53 10.29 17.49 0.18 -12.35 15 18 H 0.10 2.08 8.14 -2.39 -0.02 2.07 15 19 H 0.04 1.32 8.14 -2.39 -0.02 1.30 15 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.11 2.87 8.14 -2.39 -0.02 2.85 15 22 H 0.10 3.28 8.14 -2.39 -0.02 3.26 15 23 H 0.28 14.58 8.30 -92.71 -0.77 13.81 15 24 H 0.13 3.32 8.14 -2.38 -0.02 3.30 15 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 Total: -1.00 -74.55 238.86 4.46 -70.09 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.17 Total: 5.89 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.29 Total: -16.81 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -2.56 Total: -76.48 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.47 Total: -26.87 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -74.55 4.46 -70.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353193.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.823 kcal (2) G-P(sol) polarization free energy of solvation -74.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds