Wall clock time and date at job start Mon Mar 30 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47375 * 120.00086 * 2 1 3 5 5 N 1.33609 * 126.66885 * 300.02594 * 4 2 1 6 6 H 0.96994 * 123.10791 * 359.96263 * 5 4 2 7 7 O 1.20601 * 113.78788 * 179.97438 * 5 4 2 8 8 C 1.34330 * 112.03258 * 0.02562 * 7 5 4 9 9 O 1.21781 * 127.57451 * 180.02562 * 8 7 5 10 10 C 1.40203 * 126.67569 * 119.71247 * 4 2 1 11 11 C 1.41202 * 128.66522 * 0.02562 * 10 4 2 12 12 H 1.08003 * 119.99856 * 23.15294 * 11 10 4 13 13 C 1.39676 * 119.99857 * 203.15616 * 11 10 4 14 14 N 1.31088 * 120.00468 * 17.05019 * 13 11 10 15 15 Si 1.86804 * 119.99759 * 197.04225 * 13 11 10 16 16 H 1.48504 * 109.46972 * 60.00153 * 15 13 11 17 17 H 1.48499 * 109.47194 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47352 * 300.00228 * 15 13 11 19 19 H 1.08994 * 109.46842 * 60.00053 * 1 2 3 20 20 H 1.08995 * 109.46760 * 299.99965 * 1 2 3 21 21 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47392 * 240.00113 * 2 1 3 23 23 H 1.09002 * 109.46772 * 59.99734 * 3 2 1 24 24 H 1.08994 * 109.47597 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46849 * 300.00439 * 3 2 1 26 26 H 0.97001 * 120.00183 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7928 -0.3724 2.5007 6 1 1.2521 0.3925 2.7524 7 8 2.3112 -1.1061 3.3053 8 6 3.0082 -2.0905 2.7140 9 8 3.6380 -2.9821 3.2538 10 6 2.8370 -1.8580 1.2649 11 6 3.3567 -2.6039 0.1844 12 1 3.4776 -2.1400 -0.7833 13 6 3.7141 -3.9418 0.3673 14 7 3.2728 -4.6015 1.4105 15 14 4.8210 -4.7909 -0.8751 16 1 6.1220 -4.0785 -0.9471 17 1 5.0496 -6.1967 -0.4549 18 1 4.1718 -4.7722 -2.2106 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.5214 -5.5305 1.5376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:40 Heat of formation + Delta-G solvation = 9.495968 kcal Electronic energy + Delta-G solvation = -12747.049870 eV Core-core repulsion = 10408.446062 eV Total energy + Delta-G solvation = -2338.603809 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.84162 -36.19751 -35.57138 -33.20744 -30.75996 -29.53530 -26.65402 -25.72996 -22.23638 -21.13187 -18.78639 -18.18310 -16.24299 -16.12848 -14.87850 -14.65472 -14.04130 -13.33460 -12.86366 -12.71455 -12.69397 -11.85971 -11.60672 -11.24890 -11.04748 -10.75872 -10.65811 -10.59943 -10.24027 -10.04485 -9.17062 -8.60493 -8.28701 -6.73657 -6.35776 -3.84227 2.90024 3.23399 3.25483 3.30571 3.82023 4.17100 4.39720 5.21887 5.38229 5.49695 5.67061 5.80810 6.00717 6.14538 6.21156 6.42260 6.49974 6.78428 6.80776 6.87533 7.37515 7.44340 8.34649 8.50450 8.87979 9.08637 9.44206 9.78813 10.56689 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.014553 C = 0.011376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.016621 B = 1923.545533 C = 2460.731769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 C -0.143 4.143 4 C -0.107 4.107 5 N -0.542 5.542 6 H 0.430 0.570 7 O -0.099 6.099 8 C 0.441 3.559 9 O -0.469 6.469 10 C -0.061 4.061 11 C -0.434 4.434 12 H 0.079 0.921 13 C 0.069 3.931 14 N -0.774 5.774 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.057 0.943 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 7.652 -3.303 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 C -0.200 4.200 4 C -0.211 4.211 5 N -0.215 5.215 6 H 0.275 0.725 7 O -0.119 6.119 8 C 0.290 3.710 9 O -0.356 6.356 10 C -0.071 4.071 11 C -0.466 4.466 12 H 0.097 0.903 13 C -0.150 4.150 14 N -0.399 5.399 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.194 1.194 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.401 6.990 -2.622 8.204 hybrid contribution 0.320 -0.205 -0.310 0.490 sum -3.081 6.785 -2.931 8.008 Atomic orbital electron populations 1.21826 0.96068 1.01782 1.00128 1.19152 0.93925 0.93740 0.94559 1.21868 1.01414 0.96484 1.00261 1.20578 1.10049 1.05528 0.84898 1.39010 1.54731 1.27738 0.99986 0.72534 1.84059 1.60097 1.37947 1.29813 1.22150 0.79719 0.80056 0.89092 1.90852 1.41509 1.29254 1.74024 1.19543 1.00382 0.95419 0.91763 1.18214 1.38852 0.94098 0.95423 0.90309 1.25746 0.95676 0.97646 0.95904 1.69927 1.34762 1.09836 1.25361 0.86426 0.81276 0.78287 0.80905 1.19308 1.20688 1.19404 0.93387 0.93824 0.92341 0.89451 0.93757 0.92607 0.93341 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 37.16 0.34 -1.78 15 2 C 0.01 0.10 3.33 -91.77 -0.31 -0.21 15 3 C -0.14 -2.08 9.18 37.16 0.34 -1.74 15 4 C -0.11 -2.36 5.88 -81.08 -0.48 -2.84 15 5 N -0.54 -11.11 6.53 34.16 0.22 -10.89 15 6 H 0.43 6.85 8.96 -40.82 -0.37 6.48 15 7 O -0.10 -2.39 11.17 -7.61 -0.08 -2.48 15 8 C 0.44 12.55 8.47 34.62 0.29 12.84 15 9 O -0.47 -14.71 15.70 -18.98 -0.30 -15.01 15 10 C -0.06 -1.64 6.00 -104.14 -0.63 -2.27 15 11 C -0.43 -11.92 9.05 -37.92 -0.34 -12.27 15 12 H 0.08 2.02 7.51 -52.48 -0.39 1.62 15 13 C 0.07 1.90 5.33 -17.33 -0.09 1.81 15 14 N -0.77 -22.64 10.73 55.54 0.60 -22.04 15 15 Si 0.91 20.27 29.59 -169.99 -5.03 15.24 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 15 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.09 1.64 7.43 -51.93 -0.39 1.25 15 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 26 H 0.28 7.54 8.30 -40.82 -0.34 7.20 15 LS Contribution 232.51 15.07 3.50 3.50 Total: -1.00 -31.84 232.51 -4.78 -36.61 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -2.82 Total: 1.50 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.87 Total: -6.44 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.82 Total: -32.93 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.38 Total: -17.48 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.84 -4.78 -36.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds