Wall clock time and date at job start Mon Mar 30 2020 02:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47375 * 120.00086 * 2 1 3 5 5 N 1.33609 * 126.66885 * 300.02594 * 4 2 1 6 6 H 0.96994 * 123.10791 * 359.96263 * 5 4 2 7 7 O 1.20601 * 113.78788 * 179.97438 * 5 4 2 8 8 C 1.34330 * 112.03258 * 0.02562 * 7 5 4 9 9 O 1.21781 * 127.57451 * 180.02562 * 8 7 5 10 10 C 1.40203 * 126.67569 * 119.71247 * 4 2 1 11 11 C 1.41202 * 128.66522 * 0.02562 * 10 4 2 12 12 H 1.08003 * 119.99856 * 23.15294 * 11 10 4 13 13 C 1.39676 * 119.99857 * 203.15616 * 11 10 4 14 14 N 1.31088 * 120.00468 * 17.05019 * 13 11 10 15 15 Si 1.86804 * 119.99759 * 197.04225 * 13 11 10 16 16 H 1.48504 * 109.46972 * 60.00153 * 15 13 11 17 17 H 1.48499 * 109.47194 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47352 * 300.00228 * 15 13 11 19 19 H 1.08994 * 109.46842 * 60.00053 * 1 2 3 20 20 H 1.08995 * 109.46760 * 299.99965 * 1 2 3 21 21 H 1.08999 * 109.46881 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47392 * 240.00113 * 2 1 3 23 23 H 1.09002 * 109.46772 * 59.99734 * 3 2 1 24 24 H 1.08994 * 109.47597 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46849 * 300.00439 * 3 2 1 26 26 H 0.97001 * 120.00183 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7928 -0.3724 2.5007 6 1 1.2521 0.3925 2.7524 7 8 2.3112 -1.1061 3.3053 8 6 3.0082 -2.0905 2.7140 9 8 3.6380 -2.9821 3.2538 10 6 2.8370 -1.8580 1.2649 11 6 3.3567 -2.6039 0.1844 12 1 3.4776 -2.1400 -0.7833 13 6 3.7141 -3.9418 0.3673 14 7 3.2728 -4.6015 1.4105 15 14 4.8210 -4.7909 -0.8751 16 1 6.1220 -4.0785 -0.9471 17 1 5.0496 -6.1967 -0.4549 18 1 4.1718 -4.7722 -2.2106 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.5214 -5.5305 1.5376 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:40 Heat of formation + Delta-G solvation = -11.336555 kcal Electronic energy + Delta-G solvation = -12747.953236 eV Core-core repulsion = 10408.446062 eV Total energy + Delta-G solvation = -2339.507175 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.86631 -38.31970 -37.21824 -35.09677 -32.58631 -31.56877 -27.84886 -27.73896 -23.87427 -23.14774 -20.73085 -19.97642 -18.28885 -18.08072 -16.73201 -16.57950 -15.69992 -15.03263 -14.70595 -14.46808 -14.04480 -13.71784 -13.08603 -12.91389 -12.81371 -12.63389 -12.18269 -12.03717 -11.87388 -11.57549 -11.08083 -10.56059 -10.36127 -8.75503 -8.30630 -5.86546 0.96049 1.41355 1.49341 1.54555 1.89693 2.28939 2.37676 3.22923 3.39891 4.06322 4.25008 4.46208 4.66334 4.79502 4.91169 5.07132 5.08210 5.31176 5.32848 5.46237 5.56357 5.62229 6.34470 6.66388 6.92986 7.11640 7.37683 7.68181 8.66174 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.014553 C = 0.011376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.016621 B = 1923.545533 C = 2460.731769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.004 4.004 3 C -0.137 4.137 4 C -0.031 4.031 5 N -0.512 5.512 6 H 0.458 0.542 7 O -0.093 6.093 8 C 0.408 3.592 9 O -0.519 6.519 10 C -0.131 4.131 11 C -0.466 4.466 12 H 0.087 0.913 13 C 0.013 3.987 14 N -0.832 5.832 15 Si 0.977 3.023 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.250 1.250 19 H 0.083 0.917 20 H 0.063 0.937 21 H 0.037 0.963 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 10.528 -4.853 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 C -0.194 4.194 4 C -0.139 4.139 5 N -0.183 5.183 6 H 0.308 0.692 7 O -0.114 6.114 8 C 0.261 3.739 9 O -0.411 6.411 10 C -0.142 4.142 11 C -0.499 4.499 12 H 0.105 0.895 13 C -0.199 4.199 14 N -0.460 5.460 15 Si 0.799 3.201 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.173 1.173 19 H 0.102 0.898 20 H 0.082 0.918 21 H 0.056 0.944 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.817 9.951 -4.160 11.812 hybrid contribution 0.490 -0.685 0.212 0.869 sum -4.326 9.266 -3.947 10.962 Atomic orbital electron populations 1.21792 0.93149 1.01401 1.03037 1.19499 0.96209 0.95390 0.91263 1.21816 1.00680 0.93868 1.03074 1.21583 1.03835 1.01798 0.86715 1.39517 1.52277 1.26977 0.99555 0.69160 1.84066 1.59602 1.37527 1.30221 1.22482 0.80857 0.80748 0.89848 1.90789 1.44215 1.31418 1.74678 1.19827 1.04547 0.98580 0.91199 1.18460 1.40785 0.94665 0.95963 0.89506 1.26657 0.97052 0.98354 0.97814 1.70071 1.37694 1.09873 1.28397 0.85341 0.79079 0.76726 0.78977 1.19242 1.20859 1.17341 0.89819 0.91793 0.94423 0.90411 0.91778 0.93873 0.89904 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.18 71.98 0.66 -2.76 15 2 C 0.00 -0.12 3.33 -11.54 -0.04 -0.16 15 3 C -0.14 -3.24 9.18 71.98 0.66 -2.58 15 4 C -0.03 -1.29 5.88 42.77 0.25 -1.04 15 5 N -0.51 -19.46 6.53 -45.83 -0.30 -19.76 15 6 H 0.46 12.30 8.96 -92.71 -0.83 11.46 15 7 O -0.09 -4.45 11.17 92.30 1.03 -3.42 15 8 C 0.41 23.95 8.47 70.34 0.60 24.55 15 9 O -0.52 -34.42 15.70 18.43 0.29 -34.13 15 10 C -0.13 -7.21 6.00 -19.55 -0.12 -7.33 15 11 C -0.47 -26.27 9.05 23.35 0.21 -26.06 15 12 H 0.09 4.50 7.51 -2.91 -0.02 4.48 15 13 C 0.01 0.76 5.33 85.15 0.45 1.22 15 14 N -0.83 -51.59 10.73 21.79 0.23 -51.35 15 15 Si 0.98 43.15 29.59 68.60 2.03 45.18 15 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 18 H -0.25 -10.06 7.11 99.48 0.71 -9.35 15 19 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.04 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.08 2.68 7.43 -2.39 -0.02 2.67 15 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 15 25 H 0.08 1.50 8.14 -2.38 -0.02 1.48 15 26 H 0.27 15.84 8.30 -92.71 -0.77 15.07 15 Total: -1.00 -74.27 232.51 6.33 -67.95 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.36 Total: 9.68 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 2.68 Total: -14.16 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -0.07 Total: -71.11 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: 1.32 Total: -37.54 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.27 6.33 -67.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.612 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds