Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00125 * 3 2 1 5 5 H 1.48507 * 109.47239 * 29.99892 * 3 2 1 6 6 H 1.48496 * 109.47230 * 149.99814 * 3 2 1 7 7 C 1.37871 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47040 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.52044 * 305.12723 * 10 9 7 12 12 C 1.53242 * 109.52404 * 184.99973 * 10 9 7 13 13 C 1.53232 * 108.56852 * 184.47921 * 12 10 9 14 14 C 1.50588 * 109.16186 * 55.61878 * 13 12 10 15 15 O 1.21226 * 119.36559 * 150.90590 * 14 13 12 16 16 N 1.34148 * 121.27803 * 330.87643 * 14 13 12 17 17 C 1.34138 * 122.58329 * 0.85693 * 16 14 13 18 18 O 1.21237 * 119.35601 * 179.17315 * 17 16 14 19 19 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47231 * 60.00549 * 9 7 2 21 21 H 1.08995 * 109.47426 * 299.99772 * 9 7 2 22 22 H 1.09009 * 109.61661 * 64.75362 * 12 10 9 23 23 H 1.08998 * 109.77345 * 304.29754 * 12 10 9 24 24 H 1.09004 * 109.52523 * 295.71371 * 13 12 10 25 25 H 1.08997 * 109.57616 * 175.55524 * 13 12 10 26 26 H 0.97001 * 118.70406 * 180.56429 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9312 -3.5548 -0.8397 12 6 1.4844 -4.9863 -0.1253 13 6 2.4880 -6.1386 -0.0102 14 6 3.2522 -6.0013 1.2800 15 8 3.6771 -6.9957 1.8279 16 7 3.4726 -4.7999 1.8346 17 6 3.0184 -3.6599 1.2928 18 8 3.2388 -2.6070 1.8519 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 0.9851 -5.0310 -1.0934 23 1 0.7449 -5.0640 0.6717 24 1 3.1818 -6.1026 -0.8502 25 1 1.9550 -7.0893 -0.0185 26 1 3.9766 -4.7541 2.6621 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260419855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -88.343458 kcal Electronic energy + Delta-G solvation = -12500.810417 eV Core-core repulsion = 10157.963973 eV Total energy + Delta-G solvation = -2342.846445 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.97719 -38.39598 -35.31006 -34.12185 -32.49030 -29.95938 -26.13163 -23.34532 -23.05744 -21.40923 -18.63408 -17.22085 -16.83450 -16.08197 -15.71801 -14.55227 -14.42965 -14.09455 -13.96074 -13.12265 -12.47638 -12.33259 -11.67804 -11.46419 -11.18275 -10.74807 -10.51581 -10.48327 -10.03995 -9.80317 -9.65698 -9.27884 -8.99741 -8.30554 -5.95728 -3.93534 1.94982 3.18810 3.31553 3.36851 3.43321 3.50338 4.41179 4.52496 4.95941 5.03034 5.05340 5.42611 5.51555 5.75572 5.80669 6.06247 6.36762 6.40027 6.51465 7.31552 7.50567 7.57904 7.75681 8.02321 8.36478 8.43128 9.07709 9.68085 11.16266 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.066360 B = 0.009732 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.839451 B = 2876.530983 C = 3149.589723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.060 0.940 9 C 0.037 3.963 10 C -0.102 4.102 11 H 0.104 0.896 12 C -0.122 4.122 13 C -0.143 4.143 14 C 0.528 3.472 15 O -0.530 6.530 16 N -0.682 5.682 17 C 0.513 3.487 18 O -0.458 6.458 19 H 0.259 0.741 20 H 0.033 0.967 21 H 0.022 0.978 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -9.955 -1.429 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.123 4.123 11 H 0.122 0.878 12 C -0.160 4.160 13 C -0.182 4.182 14 C 0.318 3.682 15 O -0.405 6.405 16 N -0.348 5.348 17 C 0.301 3.699 18 O -0.325 6.325 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.040 0.960 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.522 -9.741 -1.043 10.410 hybrid contribution 0.680 0.974 0.466 1.276 sum 4.201 -8.767 -0.577 9.739 Atomic orbital electron populations 1.69949 1.05980 1.26521 1.51849 1.24936 0.94792 0.99190 0.95647 0.86581 0.80057 0.83495 0.77828 1.20866 1.21404 1.19852 1.21126 0.93174 0.90245 1.48982 0.92210 1.19099 0.92688 0.89989 0.98262 1.21729 0.99202 0.98051 0.93299 0.87837 1.21877 0.97574 0.92080 1.04444 1.21949 0.99433 1.02202 0.94629 1.21013 0.78248 0.82108 0.86866 1.90725 1.49871 1.36722 1.63210 1.45207 1.53001 1.08560 1.27990 1.21416 0.78563 0.82131 0.87786 1.90835 1.51716 1.29506 1.60421 0.93146 0.94922 0.96012 0.89107 0.90819 0.87501 0.87599 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.07 15 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 15 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.12 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 15 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.50 -13.71 7.55 -34.44 -0.26 -13.97 15 8 H 0.06 1.66 6.99 -52.48 -0.37 1.29 15 9 C 0.04 0.88 4.31 -27.88 -0.12 0.76 15 10 C -0.10 -1.81 2.40 -91.70 -0.22 -2.03 15 11 H 0.10 1.72 8.14 -51.93 -0.42 1.30 15 12 C -0.12 -1.61 5.37 -26.49 -0.14 -1.76 15 13 C -0.14 -1.60 6.07 -27.82 -0.17 -1.76 15 14 C 0.53 7.62 7.74 -11.32 -0.09 7.53 15 15 O -0.53 -8.94 17.88 5.60 0.10 -8.84 15 16 N -0.68 -10.55 5.09 -11.75 -0.06 -10.61 15 17 C 0.51 9.66 7.40 -11.32 -0.08 9.58 15 18 O -0.46 -10.72 15.07 5.59 0.08 -10.64 15 19 H 0.26 7.32 8.31 -40.82 -0.34 6.99 15 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.09 1.05 8.14 -51.92 -0.42 0.62 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 24 H 0.11 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.11 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.40 5.80 8.79 -40.82 -0.36 5.44 15 LS Contribution 229.57 15.07 3.46 3.46 Total: -1.00 -32.75 229.57 -4.70 -37.44 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -2.82 Total: -1.67 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.18 Total: -0.20 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.68 Total: -36.68 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.18 Total: -19.48 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.75 -4.70 -37.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.899 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds