Wall clock time and date at job start Mon Mar 30 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47410 * 270.00125 * 3 2 1 5 5 H 1.48507 * 109.47239 * 29.99892 * 3 2 1 6 6 H 1.48496 * 109.47230 * 149.99814 * 3 2 1 7 7 C 1.37871 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47040 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.52044 * 305.12723 * 10 9 7 12 12 C 1.53242 * 109.52404 * 184.99973 * 10 9 7 13 13 C 1.53232 * 108.56852 * 184.47921 * 12 10 9 14 14 C 1.50588 * 109.16186 * 55.61878 * 13 12 10 15 15 O 1.21226 * 119.36559 * 150.90590 * 14 13 12 16 16 N 1.34148 * 121.27803 * 330.87643 * 14 13 12 17 17 C 1.34138 * 122.58329 * 0.85693 * 16 14 13 18 18 O 1.21237 * 119.35601 * 179.17315 * 17 16 14 19 19 H 0.97001 * 119.99975 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47231 * 60.00549 * 9 7 2 21 21 H 1.08995 * 109.47426 * 299.99772 * 9 7 2 22 22 H 1.09009 * 109.61661 * 64.75362 * 12 10 9 23 23 H 1.08998 * 109.77345 * 304.29754 * 12 10 9 24 24 H 1.09004 * 109.52523 * 295.71371 * 13 12 10 25 25 H 1.08997 * 109.57616 * 175.55524 * 13 12 10 26 26 H 0.97001 * 118.70406 * 180.56429 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9312 -3.5548 -0.8397 12 6 1.4844 -4.9863 -0.1253 13 6 2.4880 -6.1386 -0.0102 14 6 3.2522 -6.0013 1.2800 15 8 3.6771 -6.9957 1.8279 16 7 3.4726 -4.7999 1.8346 17 6 3.0184 -3.6599 1.2928 18 8 3.2388 -2.6070 1.8519 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 0.9851 -5.0310 -1.0934 23 1 0.7449 -5.0640 0.6717 24 1 3.1818 -6.1026 -0.8502 25 1 1.9550 -7.0893 -0.0185 26 1 3.9766 -4.7541 2.6621 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260419855.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:54 Heat of formation + Delta-G solvation = -112.792744 kcal Electronic energy + Delta-G solvation = -12501.870618 eV Core-core repulsion = 10157.963973 eV Total energy + Delta-G solvation = -2343.906645 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.31372 -39.82281 -36.73299 -35.69150 -34.29862 -31.50121 -27.87652 -24.75113 -24.57915 -22.96593 -19.91640 -18.61728 -18.50375 -17.78931 -17.07529 -16.46280 -15.84815 -15.46037 -15.30632 -14.53458 -14.23956 -13.59243 -13.24892 -13.22329 -12.92246 -12.48649 -12.38548 -11.95943 -11.44710 -11.22657 -11.18528 -11.07414 -10.84916 -10.43568 -8.12512 -6.14832 0.64888 1.39408 1.41958 1.52795 1.91247 1.97155 2.46893 3.18343 3.25279 3.80204 3.89498 3.97816 4.38432 4.63457 4.77792 4.94639 4.99292 5.18077 5.26985 5.50808 5.63819 5.85103 6.02756 6.30204 6.50436 6.93660 7.02837 7.49647 8.99424 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.066360 B = 0.009732 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.839451 B = 2876.530983 C = 3149.589723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.040 3.960 10 C -0.098 4.098 11 H 0.123 0.877 12 C -0.112 4.112 13 C -0.129 4.129 14 C 0.530 3.470 15 O -0.550 6.550 16 N -0.676 5.676 17 C 0.521 3.479 18 O -0.515 6.515 19 H 0.260 0.740 20 H 0.027 0.973 21 H -0.010 1.010 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -11.279 -2.560 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.003 3.997 10 C -0.119 4.119 11 H 0.140 0.860 12 C -0.149 4.149 13 C -0.168 4.168 14 C 0.321 3.679 15 O -0.427 6.427 16 N -0.340 5.340 17 C 0.311 3.689 18 O -0.386 6.386 19 H 0.068 0.932 20 H 0.045 0.955 21 H 0.008 0.992 22 H 0.135 0.865 23 H 0.085 0.915 24 H 0.156 0.844 25 H 0.154 0.846 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.097 -11.110 -2.188 12.042 hybrid contribution 0.521 1.317 0.851 1.652 sum 4.619 -9.793 -1.337 10.909 Atomic orbital electron populations 1.70051 1.07216 1.27213 1.53366 1.25729 0.95635 1.02586 0.95895 0.85669 0.78445 0.79826 0.78421 1.19241 1.21258 1.20310 1.21529 0.93148 0.92049 1.47545 0.92870 1.18925 0.93297 0.91216 0.96289 1.21610 0.98527 0.98378 0.93365 0.85977 1.21812 0.97464 0.89905 1.05760 1.22032 0.99118 1.02359 0.93322 1.21692 0.77707 0.80934 0.87539 1.90733 1.50887 1.37059 1.64025 1.45081 1.52539 1.08315 1.28080 1.21576 0.77639 0.81999 0.87683 1.90813 1.54073 1.31684 1.62078 0.93165 0.95496 0.99200 0.86480 0.91470 0.84431 0.84641 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.29 21.45 0.28 -56.15 15 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 15 3 Si 0.95 45.81 29.54 68.60 2.03 47.83 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 15 6 H -0.28 -13.46 7.11 99.48 0.71 -12.76 15 7 C -0.50 -28.08 7.55 25.60 0.19 -27.89 15 8 H 0.05 2.97 6.99 -2.91 -0.02 2.95 15 9 C 0.04 1.92 4.31 29.85 0.13 2.05 15 10 C -0.10 -3.33 2.40 -11.49 -0.03 -3.36 15 11 H 0.12 3.74 8.14 -2.39 -0.02 3.72 15 12 C -0.11 -2.58 5.37 30.75 0.17 -2.42 15 13 C -0.13 -2.30 6.07 29.89 0.18 -2.12 15 14 C 0.53 13.77 7.74 87.72 0.68 14.45 15 15 O -0.55 -17.14 17.88 -2.86 -0.05 -17.19 15 16 N -0.68 -20.00 5.09 -428.61 -2.18 -22.18 15 17 C 0.52 19.33 7.40 87.72 0.65 19.98 15 18 O -0.52 -24.57 15.07 -2.90 -0.04 -24.62 15 19 H 0.26 14.88 8.31 -92.71 -0.77 14.10 15 20 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 22 H 0.12 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.14 1.76 8.14 -2.38 -0.02 1.74 15 25 H 0.14 1.79 8.14 -2.39 -0.02 1.77 15 26 H 0.41 11.43 8.79 -92.71 -0.81 10.62 15 Total: -1.00 -71.83 229.57 2.84 -68.99 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 0.38 Total: 2.30 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 2.43 Total: 1.02 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.90 Total: -78.33 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.09 Total: -41.81 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.83 2.84 -68.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419855.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.806 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds